RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF559Q9BR84 538 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 FGL2Q14314 439 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 C17orf107Q6ZR85 190 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 OR52L1Q8NGH7 329 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 ADAMTS15Q8TE58 950 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 NUS1Q96E22 293 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 KLHL15Q96M94 604 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 GINS4Q9BRT9 223 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 FBXL2Q9UKC9 423 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 ZMIZ1Q9ULJ6 1067 aa17.02■□□□□ 0.31
UPF1-210ENST00000600689 FXYD6-FXYD2A0A087WZ82 144 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 WASH3PC4AMC7 463 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 FMO6PO60774 539 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 LILRB5O75023 590 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 MAKP20794 623 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 STAT5AP42229 794 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 APOOLQ6UXV4 268 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 BTN2A1Q7KYR7 527 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 GPAT4Q86UL3 456 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 OR52I2Q8NH67 350 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 SPPL3Q8TCT6 385 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 CDS1Q92903 461 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 AICDAQ9GZX7 198 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 FXYD6Q9H0Q3 95 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 TTYH1Q9H313 450 aaPredicted RBP17.01■□□□□ 0.31
UPF1-210ENST00000600689 FKRPQ9H9S5 495 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 MARK1Q9P0L2 795 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 PEX14O75381 377 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 APOC3P02656 99 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 LPLP06858 475 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 FPR3P25089 353 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 ACADLP28330 430 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 SLC9A5Q14940 896 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 LCTLQ6UWM7 567 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 KLHDC8AQ8IYD2 350 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 LHFPL5Q8TAF8 219 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 BADQ92934 168 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 PTP4A1Q93096 173 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 DTD2Q96FN9 168 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 AIFM2Q9BRQ8 373 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 KCNMB2Q9Y691 235 aa17.01■□□□□ 0.31
UPF1-210ENST00000600689 TCF20Q9UGU0 1960 aaKnown RBP17.01■□□□□ 0.31
UPF1-210ENST00000600689 A0A0G2JPF8 293 aa17■□□□□ 0.31
UPF1-210ENST00000600689 A0A1B0GVI7 797 aa17■□□□□ 0.31
UPF1-210ENST00000600689 HNRNPCL3B7ZW38 293 aa17■□□□□ 0.31
UPF1-210ENST00000600689 HMGN1P05114 100 aa17■□□□□ 0.31
UPF1-210ENST00000600689 HNRNPCL4P0DMR1 293 aa17■□□□□ 0.31
UPF1-210ENST00000600689 C6P13671 934 aa17■□□□□ 0.31
UPF1-210ENST00000600689 ATP5A1P25705 553 aaKnown RBP17■□□□□ 0.31
UPF1-210ENST00000600689 PSMA6P60900 246 aaKnown RBP17■□□□□ 0.31
UPF1-210ENST00000600689 CRMP1Q14194 572 aa17■□□□□ 0.31
UPF1-210ENST00000600689 ZNF613Q6PF04 617 aa17■□□□□ 0.31
UPF1-210ENST00000600689 FAM198BQ6UWH4 519 aa17■□□□□ 0.31
UPF1-210ENST00000600689 DPPA4Q7L190 304 aa17■□□□□ 0.31
UPF1-210ENST00000600689 SFTPA1Q8IWL2 248 aa17■□□□□ 0.31
UPF1-210ENST00000600689 SLC44A3Q8N4M1 653 aa17■□□□□ 0.31
UPF1-210ENST00000600689 OR56B4Q8NH76 319 aa17■□□□□ 0.31
UPF1-210ENST00000600689 CAMK1GQ96NX5 476 aa17■□□□□ 0.31
UPF1-210ENST00000600689 AUP1Q9Y679 476 aa17■□□□□ 0.31
UPF1-210ENST00000600689 ACOD1A6NK06 481 aa17■□□□□ 0.31
UPF1-210ENST00000600689 UBL3O95164 117 aa17■□□□□ 0.31
UPF1-210ENST00000600689 MYOGP15173 224 aa17■□□□□ 0.31
UPF1-210ENST00000600689 VIPR2P41587 438 aa17■□□□□ 0.31
UPF1-210ENST00000600689 HTR4Q13639 388 aa17■□□□□ 0.31
UPF1-210ENST00000600689 ADGRG3Q86Y34 549 aa17■□□□□ 0.31
UPF1-210ENST00000600689 CMTM4Q8IZR5 234 aa17■□□□□ 0.31
UPF1-210ENST00000600689 OR11G2Q8NGC1 345 aa17■□□□□ 0.31
UPF1-210ENST00000600689 FERD3LQ96RJ6 166 aa17■□□□□ 0.31
UPF1-210ENST00000600689 TEAD3Q99594 435 aa17■□□□□ 0.31
UPF1-210ENST00000600689 ACSS1Q9NUB1 689 aaPredicted RBP17■□□□□ 0.31
UPF1-210ENST00000600689 PPP1R3DO95685 299 aa17■□□□□ 0.31
UPF1-210ENST00000600689 AIFM1O95831 613 aa17■□□□□ 0.31
UPF1-210ENST00000600689 PCCBP05166 539 aa17■□□□□ 0.31
UPF1-210ENST00000600689 GBX2P52951 348 aaPredicted RBP17■□□□□ 0.31
UPF1-210ENST00000600689 WDR88Q6ZMY6 472 aa17■□□□□ 0.31
UPF1-210ENST00000600689 AMZ2Q86W34 360 aa17■□□□□ 0.31
UPF1-210ENST00000600689 SETD7Q8WTS6 366 aaKnown RBP17■□□□□ 0.31
UPF1-210ENST00000600689 SMPDL3BQ92485 455 aa17■□□□□ 0.31
UPF1-210ENST00000600689 MARVELD3Q96A59 401 aa17■□□□□ 0.31
UPF1-210ENST00000600689 FN3KQ9H479 309 aa17■□□□□ 0.31
UPF1-210ENST00000600689 POMT2Q9UKY4 750 aa17■□□□□ 0.31
UPF1-210ENST00000600689 UNC119BA6NIH7 251 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 FLRT2O43155 660 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 GNA13Q14344 377 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 DHCR24Q15392 516 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 MRGPREQ86SM8 312 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 C12orf76Q8N812 135 aaPredicted RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 CNOT9Q92600 299 aaKnown RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 RSPRY1Q96DX4 576 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 OR1F2PQ96R84 312 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 CD180Q99467 661 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 LGR4Q9BXB1 951 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 ARL6Q9H0F7 186 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 TP53BP1Q12888 1972 aaPredicted RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 A0A087WV48 116 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 CARNS1A5YM72 827 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 IDSB3KWA1 339 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 MAN2B1O00754 1011 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 KHNYNO15037 678 aaKnown RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 CASC3O15234 703 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms