RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TRMT5Q32P41 509 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 TMEM176BQ3YBM2 270 aaPredicted RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 PRAMEF8Q5VWM4 474 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 PRAMEF7Q5VXH5 474 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 P4HA3Q7Z4N8 544 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 CPLX4Q7Z7G2 160 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 MTDHQ86UE4 582 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 PTOV1Q86YD1 416 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 GCNT2Q8N0V5 402 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 OR10D3Q8NH80 312 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 OR2V1Q8NHB1 315 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ZNF563Q8TA94 476 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 BBS10Q8TAM1 723 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 FNDC9Q8TBE3 224 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ST8SIA1Q92185 356 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 INTS12Q96CB8 462 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 KLHL15Q96M94 604 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 TM9SF2Q99805 663 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 CCDC106Q9BWC9 280 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 TMEM38AQ9H6F2 299 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 KCNJ16Q9NPI9 418 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ACER3Q9NUN7 267 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 STOML1Q9UBI4 398 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 PCNX1Q96RV3 2341 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 CDHR4A6H8M9 788 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 SLC22A20A6NK97 555 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 ADAMDEC1O15204 470 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 CXCL13O43927 109 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 SNX3O60493 162 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 CCDC22O60826 627 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 THBS1P07996 1170 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 PABPC4LP0CB38 370 aaKnown RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 TMIGD3P0DMS9 266 aaPredicted RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 CTSSP25774 331 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 SLC6A8P48029 635 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 IDH2P48735 452 aaKnown RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 MERTKQ12866 999 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 EPS8Q12929 822 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 LARS2Q15031 903 aaKnown RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 RABL3Q5HYI8 236 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 COQ5Q5HYK3 327 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 ZNF311Q5JNZ3 666 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 HBMQ6B0K9 141 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 NANOGP8Q6NSW7 305 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 REEP3Q6NUK4 255 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 PPP4R4Q6NUP7 873 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 ESPNLQ6ZVH7 1005 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 PLEKHM3Q6ZWE6 761 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 TREML1Q86YW5 311 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 TMEM234Q8WY98 164 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 LRRC58Q96CX6 371 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 SPATA9Q9BWV2 254 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 NSRP1Q9H0G5 558 aaKnown RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 PIF1Q9H611 641 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 KAT8Q9H7Z6 458 aaKnown RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 NANOGQ9H9S0 305 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 NPDC1Q9NQX5 325 aaPredicted RBP13.66□□□□□ -0.22
LIG1-219ENST00000600055 ZNF232Q9UNY5 417 aa13.66□□□□□ -0.22
LIG1-219ENST00000600055 PTPN13Q12923 2485 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 CFAP73A6NFT4 308 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 BBIP1A8MTZ0 92 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 DVL2O14641 736 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 SLC22A2O15244 555 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 AQP8O94778 261 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 COX4I1P13073 169 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 PRG2P13727 222 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ETS2P15036 469 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 SLC6A2P23975 617 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 AQP1P29972 269 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ACAA2P42765 397 aaKnown RBP13.65□□□□□ -0.22
LIG1-219ENST00000600055 GZMMP51124 257 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 DLX5P56178 289 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 SELENBP1Q13228 472 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 CYP51A1Q16850 503 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 SLC25A35Q3KQZ1 300 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 COMTD1Q86VU5 262 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ZZZ3Q8IYH5 903 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 OR10A6Q8NH74 314 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 OSTF1Q92882 214 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 RCN3Q96D15 328 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 SRXN1Q9BYN0 137 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 MYLK2Q9H1R3 596 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 COQ10BQ9H8M1 238 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 CACYBPQ9HB71 228 aaKnown RBP13.65□□□□□ -0.22
LIG1-219ENST00000600055 CHST11Q9NPF2 352 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 CTPS2Q9NRF8 586 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ZNF629Q9UEG4 869 aaPredicted RBP13.65□□□□□ -0.22
LIG1-219ENST00000600055 IFT52Q9Y366 437 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ZNF175Q9Y473 711 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 ARHGAP21Q5T5U3 1957 aa13.65□□□□□ -0.22
LIG1-219ENST00000600055 A0A1W2PNR3 127 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 FRS3O43559 492 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 TPST1O60507 370 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 GCM2O75603 506 aaPredicted RBP13.64□□□□□ -0.23
LIG1-219ENST00000600055 CCNA2P20248 432 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 CARD18P57730 90 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 HOXC5Q00444 222 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 GLIPR1L2Q4G1C9 344 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 RNF220Q5VTB9 566 aa13.64□□□□□ -0.23
LIG1-219ENST00000600055 NET1Q7Z628 596 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms