RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C12orf43Q96C57 262 aaKnown RBP19.14■□□□□ 0.65
UPF1-207ENST00000599848 ANKRD19PQ9H560 264 aa19.14■□□□□ 0.65
UPF1-207ENST00000599848 PRDX3P30048 256 aaKnown RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 TEKQ02763 1124 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 SYT14Q8NB59 555 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 OR14K1Q8NGZ2 314 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 C11orf40Q8WZ69 217 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 APH1AQ96BI3 265 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 DPH2Q9BQC3 489 aaPredicted RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 RGCCQ9H4X1 137 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 CTNSO60931 367 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 SNCAP37840 140 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 MAP2K3P46734 347 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 ACTBL2Q562R1 376 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 DND1Q8IYX4 353 aaKnown RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 OR5D16Q8NGK9 328 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 PIGCQ92535 297 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 BCL7BQ9BQE9 202 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 NDRG4Q9ULP0 352 aaKnown RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 SLC16A7O60669 478 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 SLC5A12Q1EHB4 618 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 VHLLQ6RSH7 139 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 C1orf87Q8N0U7 546 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 ZNF808Q8N4W9 903 aaPredicted RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 IL17RDQ8NFM7 739 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 DMRTB1Q96MA1 342 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 PRRT1Q99946 306 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 C1orf198Q9H425 327 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 ZNF355PQ9NSJ1 428 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 MCRIP1C9JLW8 97 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 TYROBPO43914 113 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 RPS17P08708 135 aaKnown RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 SLC35E2P0CK97 266 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 AADACL4Q5VUY2 407 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 LHX3Q9UBR4 397 aa19.13■□□□□ 0.65
UPF1-207ENST00000599848 TMA7Q9Y2S6 64 aaKnown RBP19.13■□□□□ 0.65
UPF1-207ENST00000599848 VAMP5O95183 116 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ATXN7L3Q14CW9 347 aaPredicted RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 PIAS4Q8N2W9 510 aaPredicted RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 ASCC1Q8N9N2 400 aaKnown RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 MOCOSQ96EN8 888 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 THOC3Q96J01 351 aaKnown RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 LRP5LA4QPB2 252 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 GABBR2O75899 941 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ABLIM3O94929 683 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 TUBG1P23258 451 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 WDR53Q7Z5U6 358 aaPredicted RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 OR6T1Q8NGN1 323 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 FEVQ99581 238 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 SLC25A31Q9H0C2 315 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 TRAV36DV7A0A075B6V5 113 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CCDC187A0A096LP49 1063 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 PRAMEF25A6NGN4 478 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 SUSD5O60279 629 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ABHD16AO95870 558 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 IL1AP01583 271 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A6P0DMU7 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A5P0DMU8 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A7P0DMV0 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A8P0DMV1 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A9P0DMV2 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 GGTA1PQ4G0N0 100 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A2Q5DJT8 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A1Q5HYN5 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CT45A3Q8NHU0 189 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 MAL2Q969L2 176 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ALG8Q9BVK2 526 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 KIR3DX1Q9H7L2 352 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 GNG12Q9UBI6 72 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ENPP5Q9UJA9 477 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 TRAV18A0A075B6X5 111 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 C1SP09871 688 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 AKR1C4P17516 323 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ZNF585AQ6P3V2 769 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 CDHR3Q6ZTQ4 885 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 PRR18Q8N4B5 295 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 ST7LQ8TDW4 575 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 OR7D2Q96RA2 312 aa19.12■□□□□ 0.65
UPF1-207ENST00000599848 NKX3-1Q99801 234 aaPredicted RBP19.12■□□□□ 0.65
UPF1-207ENST00000599848 BCL7AQ4VC05 210 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 IER5LQ5T953 404 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 RNF220Q5VTB9 566 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 RNF38Q9H0F5 515 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 FOLH1BQ9HBA9 442 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 HIF1ANQ9NWT6 349 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 LRP6O75581 1613 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 CAMLGP49069 296 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 TPMTP51580 245 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 CLDN17P56750 224 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 VWA2Q5GFL6 755 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 LPCAT3Q6P1A2 487 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 SORCS2Q96PQ0 1159 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 IGSF5Q9NSI5 407 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 PGAP2Q9UHJ9 254 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 ZNF142P52746 1687 aaPredicted RBP19.11■□□□□ 0.65
UPF1-207ENST00000599848 PTGER4P35408 488 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 RGS6P49758 472 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 FAM189BP81408 668 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 SCGB2A2Q13296 93 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 OR8B8Q15620 311 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms