RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SGCZQ96LD1 299 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 SECISBP2Q96T21 854 aaKnown RBP8.59□□□□□ -1.03
TRIM28-208ENST00000597172 ANGPTL4Q9BY76 406 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 DNAJB12Q9NXW2 375 aaKnown RBP8.59□□□□□ -1.03
TRIM28-208ENST00000597172 NDUFAF4Q9P032 175 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 ABCG2Q9UNQ0 655 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 AURKCQ9UQB9 309 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 CARD8Q9Y2G2 431 aa8.59□□□□□ -1.03
TRIM28-208ENST00000597172 INTS1Q8N201 2190 aaKnown RBP8.59□□□□□ -1.03
TRIM28-208ENST00000597172 DOCK10Q96BY6 2186 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 ANKRD33BA6NCL7 494 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 H0YHG0 523 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 C19orf84I3L1E1 186 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 J3KTA2 159 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 hCG_2039718K7EN88 272 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 GTPBP1O00178 669 aaKnown RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 FFAR1O14842 300 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 NDUFB5O43674 189 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 SCO2O43819 266 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 TIPRLO75663 272 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 CSTAP01040 98 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 UBTFL6P0CB48 400 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 HPGDP15428 266 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 IST1P53990 364 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF117Q03924 483 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 SKP2Q13309 424 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 RIPK1Q13546 671 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 ZSWIM7Q19AV6 140 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 EIPR1Q53HC9 387 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 TBCELQ5QJ74 424 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 PRAMEF20Q5VT98 475 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 HMBOX1Q6NT76 420 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 RTL4Q6ZR62 310 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 ZDHHC21Q8IVQ6 265 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 C10orf67Q8IYJ2 551 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 CYP4Z2PQ8N1L4 340 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 MDS2Q8NDY4 140 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 CATSPER1Q8NEC5 780 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 VANGL1Q8TAA9 524 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 PHF10Q8WUB8 498 aaKnown RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 GEMIN6Q8WXD5 167 aaKnown RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 LRTOMTQ8WZ04 291 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 FRMD6Q96NE9 622 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF300Q96RE9 604 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 SMR3AQ99954 134 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 SPOCK3Q9BQ16 436 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 UTP23Q9BRU9 249 aaKnown RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 TBL1XR1Q9BZK7 514 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 LAT2Q9GZY6 243 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 RNF32Q9H0A6 362 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 METTL7AQ9H8H3 244 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 LRFN1Q9P244 771 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 NKX1-2Q9UD57 310 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-208ENST00000597172 SLC35A3Q9Y2D2 325 aa8.58□□□□□ -1.04
TRIM28-208ENST00000597172 VPS13CQ709C8 3753 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 IGLV3-32A0A0A0MS00 114 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 A0A0G2JMM0 328 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 A0A1W2PPB8 328 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 A0A1W2PRS3 328 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 KIR3DP1A8MWS1 328 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 G3V3Y1 287 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 H3BNH8 94 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 AP3D1O14617 1153 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ZNF264O43296 627 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 EIF4E2O60573 245 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 TRIM3O75382 744 aaPredicted RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 DIRAS1O95057 198 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 PRSS23O95084 383 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 THY1P04216 161 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 IFNW1P05000 195 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 FABP3P05413 133 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 UBL4AP11441 157 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ENDOUP21128 410 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CNR1P21554 472 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 HTR2AP28223 471 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 DNAJA1P31689 397 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 YAP1P46937 504 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CLK3P49761 638 aaKnown RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 OC90Q02509 493 aaPredicted RBP8.57□□□□□ -1.04
TRIM28-208ENST00000597172 C17orf67Q0P5P2 114 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 SNTA1Q13424 505 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 OR1C1Q15619 314 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 OR5M10Q6IEU7 315 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 SLC30A6Q6NXT4 461 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ZFP1Q6P2D0 407 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 XKRXQ6PP77 449 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 RPTNQ6XPR3 784 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 AMIGO2Q86SJ2 522 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 MISPQ8IVT2 679 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 WDSUB1Q8N9V3 476 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 PSD4Q8NDX1 1056 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 GPR119Q8TDV5 335 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 SLC35B4Q969S0 331 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 CCDC120Q96HB5 630 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 MCHR1Q99705 422 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 PKP2Q99959 881 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 OSBPL11Q9BXB4 747 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 HES7Q9BYE0 225 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 ARMC7Q9H6L4 198 aa8.57□□□□□ -1.04
TRIM28-208ENST00000597172 EVA1AQ9H8M9 152 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms