RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 C9orf106Q8NAJ2 232 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 PCYOX1LQ8NBM8 494 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 NAXEQ8NCW5 288 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 CNOT9Q92600 299 aaKnown RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 SH3GL1Q99961 368 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 PINK1Q9BXM7 581 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 FAM107BQ9H098 131 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 KCNJ16Q9NPI9 418 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ACER3Q9NUN7 267 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ARMCX1Q9P291 453 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 ZNF443Q9Y2A4 671 aaPredicted RBP10.71□□□□□ -0.69
LIG3-213ENST00000590630 ZNF175Q9Y473 711 aa10.71□□□□□ -0.69
LIG3-213ENST00000590630 CFAP73A6NFT4 308 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 FAM90A27PA6NNH2 459 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 FAAHO00519 579 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 MRASO14807 208 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SNX3O60493 162 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 IL18BPO95998 194 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 TMIGD3P0DMS9 266 aaPredicted RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 FCGR2AP12318 317 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 DRD4P21917 467 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 CTSSP25774 331 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 RYKP34925 604 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 OPRM1P35372 400 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 EIF1AXP47813 144 aaKnown RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 ZNF136P52737 540 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SESN3P58005 492 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 EEF1A1P68104 462 aaKnown RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 RBBP4Q09028 425 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SCARB2Q14108 478 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 ADRM1Q16186 407 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SGCBQ16585 318 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 CYP51A1Q16850 503 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 CTU2Q2VPK5 515 aaKnown RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 PDSS1Q5T2R2 415 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 EEF1A1P5Q5VTE0 462 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 REP15Q6BDI9 236 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 OR2A2Q6IF42 318 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 C3orf33Q6P1S2 294 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 ZNF836Q6ZNA1 936 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 GRINAQ7Z429 371 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 P4HA3Q7Z4N8 544 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SERPINA11Q86U17 422 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 VRK2Q86Y07 508 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 C11orf65Q8NCR3 313 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 OR8J3Q8NGG0 315 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 OR10D3Q8NH80 312 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 NFKBIDQ8NI38 313 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 RP9Q8TA86 221 aaKnown RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 ZNF563Q8TA94 476 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 ZNF524Q96C55 264 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 LRRC58Q96CX6 371 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 ADGRG7Q96K78 797 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 KLHL15Q96M94 604 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SPATA5L1Q9BVQ7 753 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SFXN3Q9BWM7 321 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 SPATA9Q9BWV2 254 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 TMEM185BQ9H7F4 350 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 KAT8Q9H7Z6 458 aaKnown RBP10.7□□□□□ -0.7
LIG3-213ENST00000590630 GID8Q9NWU2 228 aa10.7□□□□□ -0.7
LIG3-213ENST00000590630 LOC100653049A0A140TA62 436 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 FXYD1O00168 92 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 TNFSF11O14788 317 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 EFNA2O43921 213 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 ADAM11O75078 769 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 KRT34O76011 436 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 TGM6O95932 706 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 CRHP06850 196 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 PABPC4LP0CB38 370 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 IL11P20809 199 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 BMP5P22003 454 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 FKBP2P26885 142 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 COL8A1P27658 744 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 GRNP28799 593 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 PRKAR1BP31321 381 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 SFTPDP35247 375 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 APOBEC1P41238 236 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 HTR3AP46098 478 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 TFF3Q07654 80 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 MERTKQ12866 999 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 CAPRIN1Q14444 709 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 PON3Q15166 354 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 ZNF311Q5JNZ3 666 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 HBMQ6B0K9 141 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 SP5Q6BEB4 398 aaPredicted RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 NANOGP8Q6NSW7 305 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 PLEKHM3Q6ZWE6 761 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 NET1Q7Z628 596 aaPredicted RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 MTDHQ86UE4 582 aaKnown RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 LIX1LQ8IVB5 337 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 SLC30A8Q8IWU4 369 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 HIPK4Q8NE63 616 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 BHLHE22Q8NFJ8 381 aaPredicted RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 OR2V1Q8NHB1 315 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 FNDC9Q8TBE3 224 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 SLC25A43Q8WUT9 341 aaPredicted RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 SLC35B4Q969S0 331 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 ZNF845Q96IR2 970 aaPredicted RBP10.69□□□□□ -0.7
LIG3-213ENST00000590630 ZNF607Q96SK3 696 aa10.69□□□□□ -0.7
LIG3-213ENST00000590630 CCDC106Q9BWC9 280 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms