RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 RNFT2Q96EX2 444 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 ADOQ96SZ5 270 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SEMA4CQ9C0C4 833 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 LAT2Q9GZY6 243 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 C12orf10Q9HB07 376 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 ATP13A2Q9NQ11 1180 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 PPIEQ9UNP9 301 aaKnown RBP13.02□□□□□ -0.32
LIG3-205ENST00000585941 EXOSC1Q9Y3B2 195 aaKnown RBP13.02□□□□□ -0.32
LIG3-205ENST00000585941 COL6A3P12111 3177 aa13.02□□□□□ -0.32
LIG3-205ENST00000585941 SAGE2PA6NJ88 616 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 BHLHE40O14503 412 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 MYL12BO14950 172 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 EIF4E2O60573 245 aaKnown RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 ALOX12BO75342 701 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 PTP4A3O75365 173 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 CLPXO76031 633 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 SP9P0CG40 484 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 CDK4P11802 303 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 SLC6A6P31641 620 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 CLK1P49759 484 aaKnown RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 EMP2P54851 167 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 CDH11P55287 796 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 NRG3P56975 720 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 TMED1Q13445 227 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 SPHARQ15513 63 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 DGUOKQ16854 277 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 ARMC4Q5T2S8 1044 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 LANCL3Q6ZV70 420 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 BCDIN3DQ7Z5W3 292 aaKnown RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 LMF1Q96S06 567 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 C19orf25Q9UFG5 118 aaPredicted RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 NXT1Q9UKK6 140 aaKnown RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 LSM2Q9Y333 95 aaKnown RBP13.02□□□□□ -0.33
LIG3-205ENST00000585941 PCDHGA5Q9Y5G8 931 aa13.02□□□□□ -0.33
LIG3-205ENST00000585941 ALG1L2C9J202 215 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 CCRL2O00421 344 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 CPNE3O75131 537 aaKnown RBP13.01□□□□□ -0.33
LIG3-205ENST00000585941 TIAF1O95411 115 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 CH25HO95992 272 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 SCG5P05408 212 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 HTR1FP30939 366 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 UGT2B10P36537 528 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 ZFP36L1Q07352 338 aaKnown RBP13.01□□□□□ -0.33
LIG3-205ENST00000585941 CRYZQ08257 329 aaKnown RBP13.01□□□□□ -0.33
LIG3-205ENST00000585941 C19orf48Q6RUI8 117 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 OR13C2Q8NGS9 318 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 C3orf49Q96BT1 292 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 OMA1Q96E52 524 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 SGTBQ96EQ0 304 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 LRFN5Q96NI6 719 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 TMEM43Q9BTV4 400 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 IFT27Q9BW83 186 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 WDR54Q9H977 334 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 CMC2Q9NRP2 79 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 GPR52Q9Y2T5 361 aa13.01□□□□□ -0.33
LIG3-205ENST00000585941 TMEM129A0AVI4 362 aa13□□□□□ -0.33
LIG3-205ENST00000585941 OR6C70A6NIJ9 312 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ELOA3DA6NLF2 546 aaPredicted RBP13□□□□□ -0.33
LIG3-205ENST00000585941 KHNYNO15037 678 aaKnown RBP13□□□□□ -0.33
LIG3-205ENST00000585941 ICOSLGO75144 302 aa13□□□□□ -0.33
LIG3-205ENST00000585941 LDOC1O95751 146 aaPredicted RBP13□□□□□ -0.33
LIG3-205ENST00000585941 HSMCR30P0CW71 290 aa13□□□□□ -0.33
LIG3-205ENST00000585941 NR4A1P22736 598 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ABCD3P28288 659 aa13□□□□□ -0.33
LIG3-205ENST00000585941 MPLP40238 635 aa13□□□□□ -0.33
LIG3-205ENST00000585941 FXYD6P3P58550 94 aa13□□□□□ -0.33
LIG3-205ENST00000585941 RNF4P78317 190 aa13□□□□□ -0.33
LIG3-205ENST00000585941 MLLT11Q13015 90 aaPredicted RBP13□□□□□ -0.33
LIG3-205ENST00000585941 DCTN2Q13561 401 aaKnown RBP13□□□□□ -0.33
LIG3-205ENST00000585941 EFR3AQ14156 821 aa13□□□□□ -0.33
LIG3-205ENST00000585941 CD226Q15762 336 aa13□□□□□ -0.33
LIG3-205ENST00000585941 MOGQ16653 247 aa13□□□□□ -0.33
LIG3-205ENST00000585941 NDUFAF6Q330K2 333 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ELOA3BQ3SY89 546 aa13□□□□□ -0.33
LIG3-205ENST00000585941 CXXC5Q7LFL8 322 aaKnown RBP13□□□□□ -0.33
LIG3-205ENST00000585941 NUP54Q7Z3B4 507 aa13□□□□□ -0.33
LIG3-205ENST00000585941 TMCO5AQ8N6Q1 288 aa13□□□□□ -0.33
LIG3-205ENST00000585941 KBTBD8Q8NFY9 601 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ELOA3Q8NG57 546 aa13□□□□□ -0.33
LIG3-205ENST00000585941 OR9Q1Q8NGQ5 310 aa13□□□□□ -0.33
LIG3-205ENST00000585941 OR8K3Q8NH51 312 aa13□□□□□ -0.33
LIG3-205ENST00000585941 NUBPLQ8TB37 319 aa13□□□□□ -0.33
LIG3-205ENST00000585941 TBC1D15Q8TC07 691 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ZHX1-C8orf76Q96EF9 292 aa13□□□□□ -0.33
LIG3-205ENST00000585941 VMP1Q96GC9 406 aa13□□□□□ -0.33
LIG3-205ENST00000585941 OR5M11Q96RB7 305 aa13□□□□□ -0.33
LIG3-205ENST00000585941 ISYNA1Q9NPH2 558 aa13□□□□□ -0.33
LIG3-205ENST00000585941 OCIAD1Q9NX40 245 aa13□□□□□ -0.33
LIG3-205ENST00000585941 TAS2R16Q9NYV7 291 aa13□□□□□ -0.33
LIG3-205ENST00000585941 RIIAD1A6NNX1 92 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 MEN1O00255 615 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 NDUFB5O43674 189 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 RFPL3O75679 317 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 NDUFB2O95178 105 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 IFNGP01579 166 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PEPDP12955 493 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 HK1P19367 917 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 PTNP21246 168 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 GADD45AP24522 165 aa12.99□□□□□ -0.33
LIG3-205ENST00000585941 ACP1P24666 158 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms