RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	C10orf82	Q8WW14	230 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	SORCS1	Q8WY21	1168 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	TAMM41	Q96BW9	452 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	OMA1	Q96E52	524 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	NRBF2	Q96F24	287 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	LMLN	Q96KR4	655 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	C2orf48	Q96LS8	159 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	RPRD1A	Q96P16	312 aa	Predicted RBP	4.24	□□□□□ -1.73
SS18-223	ENST00000583595	TSG101	Q99816	390 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	WAC	Q9BTA9	647 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	DCTN5	Q9BTE1	182 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	MRO	Q9BYG7	248 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	HOXD1	Q9GZZ0	328 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	RNF41	Q9H4P4	317 aa	Predicted RBP	4.24	□□□□□ -1.73
SS18-223	ENST00000583595	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.24	□□□□□ -1.73
SS18-223	ENST00000583595	ARMC7	Q9H6L4	198 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	SP140L	Q9H930	580 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	C2orf42	Q9NWW7	574 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	EMC3	Q9P0I2	261 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	GHRL	Q9UBU3	117 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	ASIC3	Q9UHC3	531 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	IKZF3	Q9UKT9	509 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	CDH9	Q9ULB4	789 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	TFR2	Q9UP52	801 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	GSTK1	Q9Y2Q3	226 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	RBMX2	Q9Y388	322 aa	Known RBP	4.24	□□□□□ -1.73
SS18-223	ENST00000583595	MYH8	P13535	1937 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	DLC1	Q96QB1	1528 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	NHSL1	Q5SYE7	1610 aa		4.24	□□□□□ -1.73
SS18-223	ENST00000583595	FRMPD4	Q14CM0	1322 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	KIF20B	Q96Q89	1820 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	BTNL10	A8MVZ5	291 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595		H3BSA7	217 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PGRMC1	O00264	195 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	CLDN5	O00501	218 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TXNDC9	O14530	226 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SLC9A3R1	O14745	358 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	POLR2D	O15514	142 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	DUX1	O43812	170 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	LCMT2	O60294	686 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	FGF19	O95750	216 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	HMGN1	P05114	100 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TFPT	P0C1Z6	253 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SLC35G4	P0C7Q5	338 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	UBTFL1	P0CB47	393 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	IGHV4-38-2	P0DP08	117 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PRKAR1A	P10644	381 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	FCGR1A	P12314	374 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	CCDC130	P13994	396 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ATF6	P18850	670 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	AADAC	P22760	399 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	RFC4	P35249	363 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	HSD17B2	P37059	387 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	FDFT1	P37268	417 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SLC26A3	P40879	764 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	MAGEA5	P43359	124 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	NDST1	P52848	882 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SUCLG1	P53597	346 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	AP2S1	P53680	142 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PRMT2	P55345	433 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	RPL23A	P62750	156 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	RAD51	Q06609	339 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SRSF9	Q13242	221 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	STX3	Q13277	289 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ARHGAP19	Q14CB8	494 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	OXA1L	Q15070	435 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	P2RY6	Q15077	328 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	DUSP7	Q16829	419 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SFT2D3	Q587I9	215 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ARMC12	Q5T9G4	340 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ATP1A1-AS1	Q5TC04	95 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PRAMEF5	Q5TYX0	476 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PRAMEF6	Q5VXH4	476 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	DMKN	Q6E0U4	476 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TMEM225	Q6GV28	225 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	NANOGP8	Q6NSW7	305 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	UNQ6126/PRO20091	Q6UXV3	157 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ZNF730	Q6ZMV8	503 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TRMT10C	Q7L0Y3	403 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ISCA2	Q86U28	154 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	CDR2L	Q86X02	465 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PSTK	Q8IV42	348 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	DND1	Q8IYX4	353 aa	Known RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PYROXD2	Q8N2H3	581 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PELI3	Q8N2H9	469 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TTL	Q8NG68	377 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	GRPEL2	Q8TAA5	225 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	RAB3IL1	Q8TBN0	382 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SLC2A14	Q8TDB8	520 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	CAPSL	Q8WWF8	208 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	C18orf25	Q96B23	403 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.23	□□□□□ -1.73
SS18-223	ENST00000583595	AKR1E2	Q96JD6	320 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	ST6GAL2	Q96JF0	529 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	CEP170P1	Q96L14	293 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	LURAP1	Q96LR2	239 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	PSMB7	Q99436	277 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	OMD	Q99983	421 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	TUBA1C	Q9BQE3	449 aa		4.23	□□□□□ -1.73
SS18-223	ENST00000583595	BCL7B	Q9BQE9	202 aa		4.23	□□□□□ -1.73

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