RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 FAM174BQ3ZCQ3 159 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 TMEM201Q5SNT2 666 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 SAXO2Q658L1 398 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 TYW3Q6IPR3 259 aaKnown RBP18.22■□□□□ 0.51
SHMT1-209ENST00000582653 FCRLAQ7L513 359 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 YTHDF3Q7Z739 585 aaKnown RBP18.22■□□□□ 0.51
SHMT1-209ENST00000582653 VPS37AQ8NEZ2 397 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 ZG16BQ96DA0 208 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 COX4I2Q96KJ9 171 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 Q96MF0 132 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 GSX2Q9BZM3 304 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 ACTR6Q9GZN1 396 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 WDR55Q9H6Y2 383 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-209ENST00000582653 GP6Q9HCN6 339 aa18.22■□□□□ 0.51
SHMT1-209ENST00000582653 SDHDO14521 159 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 BCAS1O75363 584 aaPredicted RBP18.21■□□□□ 0.51
SHMT1-209ENST00000582653 PRKD3O94806 890 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 LY6G6DO95868 133 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 PAX1P15863 534 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 IL12AP29459 219 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 S100A3P33764 101 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 FUT5Q11128 374 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 SELENBP1Q13228 472 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 TSC22D1Q15714 1073 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 TIGD2Q4W5G0 525 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 ATAD3BQ5T9A4 648 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 ALKBH2Q6NS38 261 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 CIARTQ8N365 385 aaPredicted RBP18.21■□□□□ 0.51
SHMT1-209ENST00000582653 MGARPQ8TDB4 240 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 ROPN1LQ96C74 230 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 PERPQ96FX8 193 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 SLC35A5Q9BS91 424 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 KLHL13Q9P2N7 655 aa18.21■□□□□ 0.51
SHMT1-209ENST00000582653 NAV3Q8IVL0 2385 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 GOLGA8QA0A0J9YX86 632 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 TMEM120BA0PK00 339 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 PRAMEF27A3QJZ7 478 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 GOLGA8OA6NCC3 632 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 E9PBE3 544 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 GOLGA8NF8WBI6 632 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 ETV2O00321 342 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 DNAJA2O60884 412 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 TMCC2O75069 709 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 H6PDO95479 791 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 SLC7A1P30825 629 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 CHI3L1P36222 383 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 CLNS1AP54105 237 aaKnown RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 SESN3P58005 492 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 OGFOD2Q6N063 350 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 TFAP2EQ6VUC0 442 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF704Q6ZNC4 412 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 EIF3MQ7L2H7 374 aaKnown RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 CROCCP2Q86T23 111 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 LSRQ86X29 649 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 WFDC8Q8IUA0 241 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 LRRC34Q8IZ02 419 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 KIRREL3Q8IZU9 778 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 STEAP2Q8NFT2 490 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 NEURL3Q96EH8 262 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 PLPPR2Q96GM1 343 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 TMEM204Q9BSN7 226 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 INPP5KQ9BT40 448 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 AIG1Q9NVV5 245 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 MARCOQ9UEW3 520 aaPredicted RBP18.2■□□□□ 0.5
SHMT1-209ENST00000582653 WDR45Q9Y484 360 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 DSCAMO60469 2012 aa18.2■□□□□ 0.5
SHMT1-209ENST00000582653 RAI1Q7Z5J4 1906 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-209ENST00000582653 H7C1Q1 480 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 KIAA0513O60268 411 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 GCM2O75603 506 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-209ENST00000582653 AGR2O95994 175 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 PLAUP00749 431 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 YES1P07947 543 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 KITP10721 976 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 EPHA3P29320 983 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 PGM1P36871 562 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 PTH2RP49190 550 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 RAC3P60763 192 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 DPY19L1Q2PZI1 675 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 FRRS1Q6ZNA5 592 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 GABRG1Q8N1C3 465 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 SLC43A2Q8N370 569 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF611Q8N823 705 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF775Q96BV0 537 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-209ENST00000582653 CCDC115Q96NT0 180 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 OR5B2Q96R09 309 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 SAP130Q9H0E3 1048 aa18.19■□□□□ 0.5
SHMT1-209ENST00000582653 ZNF701Q9NV72 531 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-209ENST00000582653 ING1Q9UK53 422 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-209ENST00000582653 HEATR5AQ86XA9 2040 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 ARID1AO14497 2285 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 CCDC154A6NI56 674 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 CLDN24A6NM45 220 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 HMGN4O00479 90 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 PGCP20142 388 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 RYKP34925 604 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 CDKN2CP42773 168 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 KHKP50053 298 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 CHRNEQ04844 493 aa18.18■□□□□ 0.5
SHMT1-209ENST00000582653 MERTKQ12866 999 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms