RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ZCCHC12Q6PEW1 402 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 IKBIPQ70UQ0 350 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 ANKS4BQ8N8V4 417 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 LINC01356Q8N9X3 169 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 ZNF527Q8NB42 609 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 RFWD2Q8NHY2 731 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 ZFP28Q8NHY6 868 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 FAM76AQ8TAV0 307 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 CIDECQ96AQ7 238 aaPredicted RBP11.15□□□□□ -0.62
SS18-219ENST00000581570 ZNF524Q96C55 264 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 MS4A4EQ96PG1 132 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 TMEM237Q96Q45 408 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 NAPGQ99747 312 aaPredicted RBP11.15□□□□□ -0.62
SS18-219ENST00000581570 BTBD2Q9BX70 525 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 GIN1Q9NXP7 522 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 STK38LQ9Y2H1 464 aa11.15□□□□□ -0.62
SS18-219ENST00000581570 IGKV3D-15A0A087WSY6 115 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 ATP6V1G2-DDX39BF2Z307 99 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 H6PDO95479 791 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 IMPDH1P20839 514 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 ATP6V1C1P21283 382 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 COMPP49747 757 aaPredicted RBP11.14□□□□□ -0.63
SS18-219ENST00000581570 PDK3Q15120 406 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 QPRTQ15274 297 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 NDUFAF6Q330K2 333 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 KLHL26Q53HC5 615 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 ANKRD26P1Q6NSI1 321 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 NOXRED1Q6NXP6 359 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 C3orf33Q6P1S2 294 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 TMPPEQ6ZT21 453 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 SLC46A3Q7Z3Q1 461 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 JADE3Q92613 823 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 GCDHQ92947 438 aaPredicted RBP11.14□□□□□ -0.63
SS18-219ENST00000581570 CHMP6Q96FZ7 201 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 EGLN2Q96KS0 407 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 HOXD1Q9GZZ0 328 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 ACSS3Q9H6R3 686 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 ANKZF1Q9H8Y5 726 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 MOKQ9UQ07 419 aa11.14□□□□□ -0.63
SS18-219ENST00000581570 SULT2B1O00204 365 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 STAMBPO95630 424 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 ITGA5P08648 1049 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 APEX1P27695 318 aaKnown RBP11.13□□□□□ -0.63
SS18-219ENST00000581570 IL2RGP31785 369 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 DIO1P49895 249 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 SERPINB9P50453 376 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 CHN2P52757 468 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 CSNK2A1P68400 391 aaPredicted RBP11.13□□□□□ -0.63
SS18-219ENST00000581570 LCP2Q13094 533 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 ZSWIM7Q19AV6 140 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 EXOSC6Q5RKV6 272 aaKnown RBP11.13□□□□□ -0.63
SS18-219ENST00000581570 ABLIM2Q6H8Q1 611 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 MTDHQ86UE4 582 aaKnown RBP11.13□□□□□ -0.63
SS18-219ENST00000581570 SPATA4Q8NEY3 305 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 TOR1AIP2Q8NFQ8 470 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 SEMA6DQ8NFY4 1073 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 OR52E4Q8NGH9 312 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 OR5W2Q8NH69 310 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 HPS1Q92902 700 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 CDS1Q92903 461 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 QRSL1Q9H0R6 528 aaKnown RBP11.13□□□□□ -0.63
SS18-219ENST00000581570 RAB17Q9H0T7 212 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 SLC17A5Q9NRA2 495 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 SERINC1Q9NRX5 453 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 MALT1Q9UDY8 824 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 AMDHD2Q9Y303 409 aa11.13□□□□□ -0.63
SS18-219ENST00000581570 DYSFO75923 2080 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 TMEM89A2RUT3 159 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 ZNF716A6NP11 495 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 TRIM49D1C9J1S8 452 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 ETV2O00321 342 aaPredicted RBP11.12□□□□□ -0.63
SS18-219ENST00000581570 GPR171O14626 319 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 LILRA1O75019 489 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 MRPL33O75394 65 aaKnown RBP11.12□□□□□ -0.63
SS18-219ENST00000581570 TACSTD2P09758 323 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 PCMT1P22061 227 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 NTF4P34130 210 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 SERPINF1P36955 418 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 CCR4P51679 360 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 ATP12AP54707 1039 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 FOXA1P55317 472 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 SLC25A3Q00325 362 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 C2orf54Q08AI8 447 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 CBFBQ13951 182 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 TIGD2Q4W5G0 525 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 ZNF385BQ569K4 471 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.12□□□□□ -0.63
SS18-219ENST00000581570 C9orf135Q5VTT2 229 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 CDC73Q6P1J9 531 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 RINLQ6ZS11 566 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 C17orf78Q8N4C9 275 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 TMCO5AQ8N6Q1 288 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 ZNF614Q8N883 585 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 PPCDCQ96CD2 204 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 STACQ99469 402 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 RAB1BQ9H0U4 201 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 PIGUQ9H490 435 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 METTL17Q9H7H0 456 aaPredicted RBP11.12□□□□□ -0.63
SS18-219ENST00000581570 DUSP22Q9NRW4 184 aa11.12□□□□□ -0.63
SS18-219ENST00000581570 NINJ2Q9NZG7 142 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms