RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MPPED2Q15777 294 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 TMEM41BQ5BJD5 291 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 ATL3Q6DD88 541 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 Q8N9L7 120 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 C20orf203Q8NBC4 194 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 DENND6BQ8NEG7 585 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 NRTNQ99748 197 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 POLR2J2Q9GZM3 115 aaKnown RBP2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 NAT10Q9H0A0 1025 aaKnown RBP2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 POLR2J3Q9H1A7 115 aaKnown RBP2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 UGT2A1Q9Y4X1 527 aa2.95□□□□□ -1.94
SMCHD1-204ENST00000581226 FRMPD4Q14CM0 1322 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 ATP10DQ9P241 1426 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 IGHV2-70DA0A0C4DH43 119 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 RGSL1A5PLK6 1076 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 MSH4O15457 936 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 DIRAS3O95661 229 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 CA1P00915 261 aaPredicted RBP2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PRB2P02812 416 aaPredicted RBP2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF853P0CG23 659 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PSG2P11465 335 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PGCP20142 388 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 TBXA2RP21731 343 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PLA2G16P53816 162 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 SYPL1Q16563 259 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 CCDC137Q6PK04 289 aaKnown RBP2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 KIAA1328Q86T90 577 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 TPRA1Q86W33 373 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 KIR3DL3Q8N743 410 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 RPL3LQ92901 407 aaKnown RBP2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PGLYRP4Q96LB8 373 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 C12orf66Q96MD2 445 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 GPA33Q99795 319 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF416Q9BWM5 594 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF331Q9NQX6 463 aaPredicted RBP2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 TAS2R3Q9NYW6 316 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 MAD1L1Q9Y6D9 718 aa2.94□□□□□ -1.94
SMCHD1-204ENST00000581226 PSMB11A5LHX3 300 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 HELTA6NFD8 242 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 A8MUA0 341 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 E7ESA3 106 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 PRKYO43930 277 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 NCF1P14598 390 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 COX7A1P24310 79 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 CTRLP40313 264 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 PRKXP51817 358 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 HTD2P86397 168 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 ARFRP1Q13795 201 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 NSDHLQ15738 373 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 CCDC57Q2TAC2 916 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 DNAJC21Q5F1R6 531 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 PAGE3Q5JUK9 113 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 RABGAP1LQ5R372 815 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 AFTPHQ6ULP2 937 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 SYT10Q6XYQ8 523 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 ACOT7LQ6ZUV0 252 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 SVOPLQ8N434 492 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF433Q8N7K0 673 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 SUMF2Q8NBJ7 301 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 NEIL3Q8TAT5 605 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 TCTEX1D2Q8WW35 142 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 RDH5Q92781 318 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 FAM104AQ969W3 186 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 C4orf36Q96KX1 117 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 MBOAT4Q96T53 435 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 GAL3ST1Q99999 423 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 KLHDC3Q9BQ90 382 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 NXF5Q9H1B4 397 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 NXF3Q9H4D5 531 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 LIN28AQ9H9Z2 209 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 MYOZ2Q9NPC6 264 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 MMP26Q9NRE1 261 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 GNG12Q9UBI6 72 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 AURKCQ9UQB9 309 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 CACNG2Q9Y698 323 aa2.93□□□□□ -1.94
SMCHD1-204ENST00000581226 A0A0G2JRQ6 117 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 K7EPI3 171 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 MAPK13O15264 365 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 TRAF3IP2O43734 574 aaPredicted RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 OR1F1O43749 312 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 NPIPB7O75200 414 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF780AO75290 641 aaPredicted RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 B3GALNT1O75752 331 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 MFN2O95140 757 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 KLF8O95600 359 aaPredicted RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF32P17041 273 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 NUDT1P36639 197 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ACADVLP49748 655 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 CSTF1Q05048 431 aaKnown RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 PJVKQ0ZLH3 352 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 MXD4Q14582 209 aaPredicted RBP2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ARL6IP1Q15041 203 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 Q6P435 159 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 BLOC1S2Q6QNY1 142 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 RNF165Q6ZSG1 346 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ACOT1Q86TX2 421 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 ZNF573Q86YE8 665 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 FADS6Q8N9I5 356 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 OR5L2Q8NGL0 311 aa2.92□□□□□ -1.94
SMCHD1-204ENST00000581226 RAPGEF5Q92565 580 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms