RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CCNYL3P0C7X3 344 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SOX3P41225 446 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 NR4A2P43354 598 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 PPP5CP53041 499 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SLC37A1P57057 533 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ARHGAP11BQ3KRB8 267 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 EXOSC6Q5RKV6 272 aaKnown RBP11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 HES3Q5TGS1 186 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZER1Q7Z7L7 766 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 IQCF2Q8IXL9 164 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZNF614Q8N883 585 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZSCAN1Q8NBB4 408 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 OR52P1PQ8NH57 321 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 WDR36Q8NI36 951 aaKnown RBP11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZNF721Q8TF20 911 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 MFRPQ9BY79 579 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SP140LQ9H930 580 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CPNE5Q9HCH3 593 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ACAD8Q9UKU7 415 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 LIPT1Q9Y234 373 aa11.69□□□□□ -0.54
CDK5RAP3-217ENST00000580287 BLACEA4D250 179 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 RGS8P57771 180 aaPredicted RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ILKQ13418 452 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 NDUFA5Q16718 116 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CLPPQ16740 277 aaPredicted RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 C3orf38Q5JPI3 329 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 LYSMD2Q8IV50 215 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 DHRS1Q96LJ7 313 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 DUSP22Q9NRW4 184 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 MAN2C1Q9NTJ4 1040 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 KLHL28Q9NXS3 571 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CALML5Q9NZT1 146 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 DSPPQ9NZW4 1301 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 IGLV3-12A0A075B6K2 115 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 TLX2O43763 284 aaPredicted RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 PRAMEF2O60811 474 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 UPK1BO75841 260 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 NKX2-2O95096 273 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 JMJD7P0C870 316 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 EMP2P54851 167 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 POU6F2P78424 691 aaPredicted RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ELAVL1Q15717 326 aaKnown RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 TSTQ16762 297 aaKnown RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZNF730Q6ZMV8 503 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 TIPARPQ7Z3E1 657 aaKnown RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CAPSLQ8WWF8 208 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CDC6Q99741 560 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CRB3Q9BUF7 120 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 TGIF2Q9GZN2 237 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 NXF5Q9H1B4 397 aaKnown RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 TRIM45Q9H8W5 580 aaPredicted RBP11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 FLRT3Q9NZU0 649 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CNIH4Q9P003 139 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 OR10H1Q9Y4A9 318 aa11.68□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SMIM30A4D0T7 59 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 EFCAB10A6NFE3 127 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 AP3D1O14617 1153 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 STK17BO94768 372 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 IGKV3-11P04433 115 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 KLK3P07288 261 aaPredicted RBP11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SPNP16150 400 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 IFNA8P32881 189 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 RGS6P49758 472 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 RPS18P62269 152 aaKnown RBP11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 GINS1Q14691 196 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 PLEKHM3Q6ZWE6 761 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 PIP4P1Q86T03 277 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 C9orf40Q8IXQ3 194 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CYP4Z2PQ8N1L4 340 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 GPA33Q99795 319 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CDADC1Q9BWV3 514 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZNF350Q9GZX5 532 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 FKBP14Q9NWM8 211 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 FOXJ2Q9P0K8 574 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SH3D21A4FU49 640 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 VSTM2BA6NLU5 285 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 C9orf172C9J069 976 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ALOX12BO75342 701 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 STX11O75558 287 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 GKN3PP0CG01 181 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 NBL1P41271 181 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ZNHIT3Q15649 155 aaPredicted RBP11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CLEC12AQ5QGZ9 265 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 DCAF12Q5T6F0 453 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SLX4IPQ5VYV7 408 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 MRPL14Q6P1L8 145 aaKnown RBP11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ASCL5Q7RTU5 278 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SLC46A3Q7Z3Q1 461 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 ANKRD37Q7Z713 158 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SLC34A3Q8N130 599 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 PLPP5Q8NEB5 264 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 OR4C3Q8NH37 302 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 KCNS3Q9BQ31 491 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 EGLN3Q9H6Z9 239 aa11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 MTHFD2LQ9H903 347 aaPredicted RBP11.67□□□□□ -0.54
CDK5RAP3-217ENST00000580287 A0A087WUU8 490 aa11.66□□□□□ -0.54
CDK5RAP3-217ENST00000580287 C17orf51A8MQB3 221 aa11.66□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SNPHO15079 494 aa11.66□□□□□ -0.54
CDK5RAP3-217ENST00000580287 SSX4O60224 188 aa11.66□□□□□ -0.54
CDK5RAP3-217ENST00000580287 CYP7B1O75881 506 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms