RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PFN4Q8NHR9 129 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 JSRP1Q96MG2 331 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-207ENST00000580002 FRMD6Q96NE9 622 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 GNRHR2Q96P88 292 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 GABARAPL1Q9H0R8 117 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 EVA1AQ9H8M9 152 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 TMCC3Q9ULS5 477 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 OR10H3O60404 316 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 SNAP29O95721 258 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 ALDH3A2P51648 485 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 ARHGDIAP52565 204 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 SMIM11AP58511 58 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 COPZ1P61923 177 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 TLE3Q04726 772 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 SLC30A6Q6NXT4 461 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 FAHD1Q6P587 224 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 TMEM81Q6P7N7 255 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 POMZP3Q6PJE2 187 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 ZER1Q7Z7L7 766 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 MISPQ8IVT2 679 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 DND1Q8IYX4 353 aaKnown RBP22.83■■□□□ 1.24
SHMT1-207ENST00000580002 AQP11Q8NBQ7 271 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 TOR1AIP2Q8NFQ8 470 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 GTPBP3Q969Y2 492 aaKnown RBP22.83■■□□□ 1.24
SHMT1-207ENST00000580002 RPS6KB2Q9UBS0 482 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 VDAC3Q9Y277 283 aa22.83■■□□□ 1.24
SHMT1-207ENST00000580002 KPNA4O00629 521 aaPredicted RBP22.82■■□□□ 1.24
SHMT1-207ENST00000580002 CCNA2P20248 432 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 IL1RL1Q01638 556 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 SNTA1Q13424 505 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 CBFBQ13951 182 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 WBP2NLQ6ICG8 309 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 PGBD2Q6P3X8 592 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 ATG16L2Q8NAA4 619 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 SDCCAG3Q96C92 435 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 KLHL1Q9NR64 748 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 CNIH4Q9P003 139 aa22.82■■□□□ 1.24
SHMT1-207ENST00000580002 IGLV3-32A0A0A0MS00 114 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 MED19A0JLT2 244 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ANKUB1A6NFN9 424 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 TAF4O00268 1085 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 FAAHO00519 579 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 P04436 131 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 CBLP22681 906 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 TACR3P29371 465 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 KDM4DQ6B0I6 523 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ULK3Q6PHR2 472 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 LINC00114Q6XXX2 140 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ZNF730Q6ZMV8 503 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 NRMQ8IXM6 262 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 SLC38A4Q969I6 547 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 DNAJA3Q96EY1 480 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ZNF597Q96LX8 424 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ADAM19Q9H013 955 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 SACM1LQ9NTJ5 587 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 C20orf141Q9NUB4 165 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 CHP2O43745 196 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 PGCP20142 388 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ENDOUP21128 410 aaKnown RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 SLC6A8P48029 635 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 MFAP5Q13361 173 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ATG4DQ86TL0 474 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 FADS6Q8N9I5 356 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 OR5M1Q8NGP8 315 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ACOT11Q8WXI4 607 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 NR4A3Q92570 626 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 RBM4BQ9BQ04 359 aaKnown RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 RBM4Q9BWF3 364 aaKnown RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 POLR2J2Q9GZM3 115 aaKnown RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 POLR2J3Q9H1A7 115 aaKnown RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 VCX3BQ9H321 246 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 MEPEQ9NQ76 525 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-207ENST00000580002 SDHAF3Q9NRP4 125 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 TAS2R10Q9NYW0 307 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 USE1Q9NZ43 259 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 ABI3Q9P2A4 366 aa22.81■■□□□ 1.24
SHMT1-207ENST00000580002 CHD8Q9HCK8 2581 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 ANKRD33BA6NCL7 494 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 SLC25A12O75746 678 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 IGFBP1P08833 259 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-207ENST00000580002 FUT1P19526 365 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 IFNA8P32881 189 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 SLC1A3P43003 542 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 RPP38P78345 283 aaKnown RBP22.8■■□□□ 1.24
SHMT1-207ENST00000580002 C6orf52Q5T4I8 152 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 PLCZ1Q86YW0 608 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 TMEM239Q8WW34 195 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 ZNF184Q99676 751 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-207ENST00000580002 MED17Q9NVC6 651 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 OSGIN1Q9UJX0 560 aa22.8■■□□□ 1.24
SHMT1-207ENST00000580002 IGKV1D-42A0A075B6H8 117 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 SNPHO15079 494 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 TRIM3O75382 744 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-207ENST00000580002 RFPL3SP0C7P2 107 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 EPHA2P29317 976 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 RFC3P40938 356 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 CD97P48960 835 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 GPALPP1Q8IXQ4 340 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 PACRGLQ8N7B6 248 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 MDS2Q8NDY4 140 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms