RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 KMT5CQ86Y97 462 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 PLD3Q8IV08 490 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 CENPSQ8N2Z9 138 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 COMMD1Q8N668 190 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 DEFB119Q8N690 84 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 TCEANCQ8N8B7 351 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 SLC37A3Q8NCC5 494 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 NANPQ8TBE9 248 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 FAM81AQ8TBF8 368 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 ZNF473Q8WTR7 871 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 MRPL24Q96A35 216 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 C17orf77Q96MU5 243 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 TGM7Q96PF1 710 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 STRADBQ9C0K7 418 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 IQCGQ9H095 443 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 TMEM185BQ9H7F4 350 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 ANKRA2Q9H9E1 313 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 SLC25A19Q9HC21 320 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 MARCH5Q9NX47 278 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 TUBA8Q9NY65 449 aaPredicted RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 SMARCAL1Q9NZC9 954 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 GCNT4Q9P109 453 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 C19orf25Q9UFG5 118 aaPredicted RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 ADAM28Q9UKQ2 775 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 PACSIN2Q9UNF0 486 aaPredicted RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 STK38LQ9Y2H1 464 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 MRPL11Q9Y3B7 192 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 WNK1Q9H4A3 2382 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 SHANK1Q9Y566 2161 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 TRBV4-1A0A0J9YWV2 114 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 TTC26A0AVF1 554 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 HNRNPCL2B2RXH8 293 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 TNFRSF13BO14836 293 aaPredicted RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 NBR2O15453 112 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 KCNJ13O60928 360 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 CSTAP01040 98 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 MBL2P11226 248 aaPredicted RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 ZNF23P17027 643 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 TNFRSF1BP20333 461 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 CPN2P22792 545 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 PROZP22891 400 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 DEKP35659 375 aaKnown RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 MAGEA5P43359 124 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 DUSP3P51452 185 aaPredicted RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 ART1P52961 327 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 RAG2P55895 527 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 MYL7Q01449 175 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 ILKQ13418 452 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 TFDP1Q14186 410 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 CHI3L2Q15782 390 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 HIKESHIQ53FT3 197 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 TCHHL1Q5QJ38 904 aaPredicted RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 C10orf25Q5T742 122 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 AGBL2Q5U5Z8 902 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 OR2A2Q6IF42 318 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 SLC18B1Q6NT16 456 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 UQCC3Q6UW78 93 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 ZNF788Q6ZQV5 615 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 EIF3MQ7L2H7 374 aaKnown RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 YTHDF3Q7Z739 585 aaKnown RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 C17orf64Q86WR6 236 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 MNS1Q8NEH6 495 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 OR1L4Q8NGR5 311 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 OR8K3Q8NH51 312 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 HTR3CQ8WXA8 447 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 UPRTQ96BW1 309 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 SLC47A1Q96FL8 570 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 AMDHD1Q96NU7 426 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 RIOK1Q9BRS2 568 aaKnown RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 ZNF160Q9HCG1 818 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 ECHDC1Q9NTX5 307 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 SLC2A8Q9NY64 477 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 HACD3Q9P035 362 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 PDP1Q9P0J1 537 aaPredicted RBP5.03□□□□□ -1.6
VPS53-219ENST00000576019 GNG12Q9UBI6 72 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 IKZF3Q9UKT9 509 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 RPH3ALQ9UNE2 315 aa5.03□□□□□ -1.6
VPS53-219ENST00000576019 CROCCQ5TZA2 2017 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 IGLV5-52A0A0A0MRZ9 124 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 OR6C75A6NL08 312 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 BTN3A3O00478 584 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LSM1O15116 133 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 CFLARO15519 480 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 DUX1O43812 170 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 GLRA3O75311 464 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LRCH4O75427 683 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 SCGNO76038 276 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 PMS2P2O95744 297 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 TSPAN12O95859 305 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LGI1O95970 557 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ANXA3P12429 323 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 CDH1P12830 882 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 EFNA1P20827 205 aaPredicted RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 TUBG1P23258 451 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 CERS1P27544 350 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ATP5C1P36542 298 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 CASP4P49662 377 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 CLDN8P56748 225 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 RPL24P83731 157 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 EWSR1Q01844 656 aaKnown RBP eCLIP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms