RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MXRA8Q9BRK3 442 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 BEX2Q9BXY8 128 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SRRQ9GZT4 340 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 FAM49AQ9H0Q0 323 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 THAP2Q9H0W7 228 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CSTL1Q9H114 145 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NXF3Q9H4D5 531 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 RNF121Q9H920 327 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 WDR41Q9HAD4 459 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CACYBPQ9HB71 228 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 KRCC1Q9NPI7 259 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TUBG2Q9NRH3 451 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ECHDC1Q9NTX5 307 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GSKIPQ9P0R6 139 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 RCC2Q9P258 522 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TMEM181Q9P2C4 612 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SLC17A7Q9P2U7 560 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 DNAJB11Q9UBS4 358 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SEC14L3Q9UDX4 400 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 IL20RAQ9UHF4 553 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OPN4Q9UHM6 478 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SMPXQ9UHP9 88 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ZNF225Q9UK10 706 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 FEM1BQ9UK73 627 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR52A1Q9UKL2 312 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TSPAN16Q9UKR8 245 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 WIF1Q9Y5W5 379 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MRPS18BQ9Y676 258 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 CRB1P82279 1406 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 AFDNP55196 1824 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 RBBP6Q7Z6E9 1792 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 A0A0G2JLW4 131 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GLYATL1P3A0A0U1RQE8 302 aa3□□□□□ -1.93
VPS35-208ENST00000568612 A0A0U1RQF3 1178 aa3□□□□□ -1.93
VPS35-208ENST00000568612 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 PI4KAP2A4QPH2 592 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TBC1D3BA6NDS4 549 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CLDN24A6NM45 220 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ERI2A8K979 691 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 GABRR3A8MPY1 467 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MAGEB17A8MXT2 336 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ZNF99A8MXY4 864 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 E5RJQ4 531 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NPIPA7E9PJI5 369 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NPIPB9F8W1W9 429 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NR5A2O00482 541 aa3□□□□□ -1.93
VPS35-208ENST00000568612 DLGAP1O14490 977 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SOCS6O14544 535 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MYL12BO14950 172 aa3□□□□□ -1.93
VPS35-208ENST00000568612 OGG1O15527 345 aa3□□□□□ -1.93
VPS35-208ENST00000568612 FLRT2O43155 660 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SPRY2O43597 315 aa3□□□□□ -1.93
VPS35-208ENST00000568612 XPNPEP2O43895 674 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TMPRSS11DO60235 418 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SRPX2O60687 465 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 GGCTO75223 188 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 NDUFS3O75489 264 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CA11O75493 328 aa3□□□□□ -1.93
VPS35-208ENST00000568612 KHDRBS3O75525 346 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 GJB3O75712 270 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ZMPSTE24O75844 475 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SNAPC5O75971 98 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PAPSS2O95340 614 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 VNN2O95498 520 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MPC2O95563 127 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GLUD1P00367 558 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ADAP00813 363 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CALCAP01258 141 aa3□□□□□ -1.93
VPS35-208ENST00000568612 IFNA21P01568 189 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ANXA2P07355 339 aaKnown RBP3□□□□□ -1.93
VPS35-208ENST00000568612 NMBP08949 121 aa3□□□□□ -1.93
VPS35-208ENST00000568612 OR56A5P0C7T3 313 aa3□□□□□ -1.93
VPS35-208ENST00000568612 STAG3L2P0CL84 134 aa3□□□□□ -1.93
VPS35-208ENST00000568612 NPIPA8P0DM63 369 aa3□□□□□ -1.93
VPS35-208ENST00000568612 HAPLN1P10915 354 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 PEPDP12955 493 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GABRA1P14867 456 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CD19P15391 556 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ZNF7P17097 686 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 MYL12AP19105 171 aa3□□□□□ -1.93
VPS35-208ENST00000568612 SRMP19623 302 aa3□□□□□ -1.93
VPS35-208ENST00000568612 TBXA2RP21731 343 aa3□□□□□ -1.93
VPS35-208ENST00000568612 LHCGRP22888 699 aa3□□□□□ -1.93
VPS35-208ENST00000568612 C21orf33P30042 268 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 SLC6A1P30531 599 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CALCRP30988 508 aa3□□□□□ -1.93
VPS35-208ENST00000568612 OTX1P32242 354 aaPredicted RBP3□□□□□ -1.93
VPS35-208ENST00000568612 ICAM3P32942 547 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PSMB10P40306 273 aa3□□□□□ -1.93
VPS35-208ENST00000568612 PMELP40967 661 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CD200P41217 278 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MNDAP41218 407 aa3□□□□□ -1.93
VPS35-208ENST00000568612 MAP2K4P45985 399 aa3□□□□□ -1.93
VPS35-208ENST00000568612 GLUD2P49448 558 aa3□□□□□ -1.93
VPS35-208ENST00000568612 RORCP51449 518 aa3□□□□□ -1.93
VPS35-208ENST00000568612 EMP2P54851 167 aa3□□□□□ -1.93
VPS35-208ENST00000568612 DNAJB13P59910 316 aa3□□□□□ -1.93
VPS35-208ENST00000568612 ERVS71-1P61550 626 aa3□□□□□ -1.93
VPS35-208ENST00000568612 CSNK1G2P78368 415 aa3□□□□□ -1.93
VPS35-208ENST00000568612 DCDP81605 110 aaKnown RBP3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms