RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SLC35A3Q9Y2D2 325 aa13.47□□□□□ -0.25
VPS39-210ENST00000568357 A0A096LPI6 279 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 CLIC1O00299 241 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 CGAP01215 116 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 NUDT7P0C024 238 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 NID1P14543 1247 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 RPS4Y1P22090 263 aaKnown RBP13.46□□□□□ -0.25
VPS39-210ENST00000568357 RYKP34925 604 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 ATP4BP51164 291 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 DSTNP60981 165 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 SIRPAP78324 504 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 SQLEQ14534 574 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 RGNQ15493 299 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 PPP4R4Q6NUP7 873 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 CDH24Q86UP0 819 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 LINC01560Q8TB33 94 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 STON2Q8WXE9 905 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 PRRG4Q9BZD6 226 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 SLC24A3Q9HC58 644 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 TMEM45AQ9NWC5 275 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 PAQR5Q9NXK6 330 aaPredicted RBP13.46□□□□□ -0.25
VPS39-210ENST00000568357 GALNT8Q9NY28 637 aa13.46□□□□□ -0.25
VPS39-210ENST00000568357 INTS1Q8N201 2190 aaKnown RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 DOCK7Q96N67 2140 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 TUBAL3A6NHL2 446 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 MSTNO14793 375 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 SMNDC1O75940 238 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS39-210ENST00000568357 FCGR2AP12318 317 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 NCF2P19878 526 aaPredicted RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 PGCP20142 388 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 PEX19P40855 299 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 CPA2P48052 419 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 PDSS1Q5T2R2 415 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 LRIF1Q5T3J3 769 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 ZNF474Q6S9Z5 364 aaPredicted RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 FAM214BQ7L5A3 538 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 LSRQ86X29 649 aaPredicted RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 KIF18BQ86Y91 864 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 ROBO4Q8WZ75 1007 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 ST8SIA1Q92185 356 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 PMM1Q92871 262 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 SRXN1Q9BYN0 137 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 OPN3Q9H1Y3 402 aaPredicted RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 ZNF385DQ9H6B1 395 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 COQ10BQ9H8M1 238 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 EXOSC3Q9NQT5 275 aaKnown RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 ACER3Q9NUN7 267 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 DNAJB12Q9NXW2 375 aaKnown RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 P2RX2Q9UBL9 471 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 MCTS1Q9ULC4 181 aaKnown RBP13.45□□□□□ -0.26
VPS39-210ENST00000568357 CLEC4AQ9UMR7 237 aa13.45□□□□□ -0.26
VPS39-210ENST00000568357 ZNF469Q96JG9 3925 aaPredicted RBP13.44□□□□□ -0.26
VPS39-210ENST00000568357 A0A0G2JND7 137 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 A0A1W2PNR3 127 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 GJE1A6NN92 205 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 AP3D1O14617 1153 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 SYNGR4O95473 234 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 BCHEP06276 602 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 DBIP07108 87 aaKnown RBP13.44□□□□□ -0.26
VPS39-210ENST00000568357 IL7RP16871 459 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 IRX1P78414 480 aaPredicted RBP13.44□□□□□ -0.26
VPS39-210ENST00000568357 FAM27E3Q08E93 113 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 MERTKQ12866 999 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 SELENBP1Q13228 472 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 RPS26P11Q5JNZ5 115 aaPredicted RBP13.44□□□□□ -0.26
VPS39-210ENST00000568357 PLEKHM3Q6ZWE6 761 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 VRK2Q86Y07 508 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 CMIPQ8IY22 773 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 C10orf111Q8N326 155 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 ARFGAP2Q8N6H7 521 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 ZNF610Q8N9Z0 462 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 OR52P1PQ8NH57 321 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 FAM222BQ8WU58 562 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 WDR60Q8WVS4 1066 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 TMEM234Q8WY98 164 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 MAL2Q969L2 176 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 CCDC106Q9BWC9 280 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 RLIMQ9NVW2 624 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 VAPAQ9P0L0 249 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 ABCA2Q9BZC7 2435 aa13.44□□□□□ -0.26
VPS39-210ENST00000568357 DSPPQ9NZW4 1301 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 TRBV5-3A0A0A0MS03 114 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 A0A1W2PP18 115 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 FAM221AA4D161 298 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 SS18L1O75177 396 aaPredicted RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 CTAG2O75638 210 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 CD8BP10966 210 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 BMP2P12643 396 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 ENPP1P22413 925 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 CPOXP36551 454 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 IDH2P48735 452 aaKnown RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 CRISP3P54108 245 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 SORDQ00796 357 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 ZNF239Q16600 458 aaKnown RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 MRPL2Q5T653 305 aaKnown RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 DLEU7Q6UYE1 221 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 ADGRG3Q86Y34 549 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 PEX5LQ8IYB4 626 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 ZNF563Q8TA94 476 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 TMEM19Q96HH6 336 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms