RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NMRK1Q9NWW6 199 aa10.21□□□□□ -0.77
CLK3-222ENST00000568232 ZNF225Q9UK10 706 aa10.21□□□□□ -0.77
CLK3-222ENST00000568232 SNX6Q9UNH7 406 aa10.21□□□□□ -0.77
CLK3-222ENST00000568232 CARD8Q9Y2G2 431 aa10.21□□□□□ -0.77
CLK3-222ENST00000568232 GRIP1Q9Y3R0 1128 aa10.21□□□□□ -0.77
CLK3-222ENST00000568232 SH3PXD2BA1X283 911 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 ZNF716A6NP11 495 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 PDLIM1O00151 329 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 SCDO00767 359 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 WNT9BO14905 357 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 KCNK2O95069 426 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 NKX2-2O95096 273 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 MSMBP08118 114 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 ACP2P11117 423 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 PRKCAP17252 672 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 MAP3K8P41279 467 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 CDH13P55290 713 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 C2orf80Q0P641 193 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 CCNJQ5T5M9 372 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 C3orf62Q6ZUJ4 267 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 MISPQ8IVT2 679 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 CLDND2Q8NHS1 167 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 PHOSPHO1Q8TCT1 267 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 GPR119Q8TDV5 335 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 UBASH3BQ8TF42 649 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 TAF15Q92804 592 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-222ENST00000568232 DNAJA3Q96EY1 480 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 AMDHD1Q96NU7 426 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 OSBPL9Q96SU4 736 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 SUCNR1Q9BXA5 334 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 UNKLQ9H9P5 680 aaKnown RBP10.2□□□□□ -0.78
CLK3-222ENST00000568232 HHATLQ9HCP6 504 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 MALT1Q9UDY8 824 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 ICAM5Q9UMF0 924 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 AMDHD2Q9Y303 409 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 PPIAL4AQ9Y536 164 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 PCDHB14Q9Y5E9 798 aa10.2□□□□□ -0.78
CLK3-222ENST00000568232 GPC6Q9Y625 555 aaPredicted RBP10.2□□□□□ -0.78
CLK3-222ENST00000568232 IGKV3D-15A0A087WSY6 115 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 IGHV1-18A0A0C4DH31 117 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 A0A1W2PQD3 144 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 KIF2AO00139 706 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 MANBAO00462 879 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 SLITRK5O94991 958 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 OR4F21O95013 312 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 KLHL2O95198 593 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 IGFBP1P08833 259 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 PRPS2P11908 318 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 DDX5P17844 614 aaKnown RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 DDCP20711 480 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 TIA1P31483 386 aaKnown RBP eCLIP10.19□□□□□ -0.78
CLK3-222ENST00000568232 DIO1P49895 249 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 PRKAG1P54619 331 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 BTKQ06187 659 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 SELENBP1Q13228 472 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 EFNB3Q15768 340 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 TECRLQ5HYJ1 363 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 MROH9Q5TGP6 573 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 ABLIM2Q6H8Q1 611 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 ZNF551Q7Z340 670 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 LSRQ86X29 649 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 KLHL7Q8IXQ5 586 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 MMGT1Q8N4V1 131 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 ZNF527Q8NB42 609 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 SLC16A11Q8NCK7 471 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 NEU4Q8WWR8 484 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 C22orf15Q8WYQ4 148 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 HOXB13Q92826 284 aaPredicted RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 ACPTQ9BZG2 426 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 QRSL1Q9H0R6 528 aaKnown RBP10.19□□□□□ -0.78
CLK3-222ENST00000568232 TREM2Q9NZC2 230 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 EMC3Q9P0I2 261 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 JRKLQ9Y4A0 524 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 PTGDR2Q9Y5Y4 395 aa10.19□□□□□ -0.78
CLK3-222ENST00000568232 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 A0A096LPK6 155 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 HMX2A2RU54 273 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 MRPL33O75394 65 aaKnown RBP10.18□□□□□ -0.78
CLK3-222ENST00000568232 ALX3O95076 343 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 OTCP00480 354 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 PNPP00491 289 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 ANXA4P09525 319 aaPredicted RBP10.18□□□□□ -0.78
CLK3-222ENST00000568232 ADRA2CP18825 462 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 CDH2P19022 906 aaPredicted RBP10.18□□□□□ -0.78
CLK3-222ENST00000568232 NTSP30990 170 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 P2RX1P51575 399 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 PRPS1P60891 318 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 IL1RL1Q01638 556 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 DR1Q01658 176 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 ACSM2AQ08AH3 577 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 HSPB3Q12988 150 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 ADRM1Q16186 407 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 DUSP5Q16690 384 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 HIKESHIQ53FT3 197 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 ACSM2BQ68CK6 577 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 CYS1Q717R9 158 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 OR6Y1Q8NGX8 325 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 CEP70Q8NHQ1 597 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 RFWD2Q8NHY2 731 aa10.18□□□□□ -0.78
CLK3-222ENST00000568232 GIMAP5Q96F15 307 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms