RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 BET1O15155 118 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 LANCL1O43813 399 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 MT-ATP6P00846 226 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 RNH1P13489 461 aaKnown RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 ETS1P14921 441 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 IGFBP3P17936 291 aaPredicted RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 HLA-DPA1P20036 260 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 MAGEA5P43359 124 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 RPS9P46781 194 aaKnown RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 CCR6P51684 374 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 SNX1Q13596 522 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 CCDC40Q4G0X9 1142 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 OR52W1Q6IF63 320 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 NEK5Q6P3R8 708 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 C6orf120Q7Z4R8 191 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 ELMOD2Q8IZ81 293 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 FAM9BQ8IZU0 186 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 RNF148Q8N7C7 305 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 CHCHD10Q8WYQ3 142 aaPredicted RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 FCGR1BQ92637 280 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 TMEM186Q96B77 213 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 CELF6Q96J87 481 aaKnown RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 MS4A14Q96JA4 679 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 LINC00477Q96M19 166 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 TSNARE1Q96NA8 513 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 ANO10Q9NW15 660 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 MTRF1LQ9UGC7 380 aaKnown RBP1.56□□□□□ -2.16
VPS35-207ENST00000568191 FOXJ3Q9UPW0 622 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 ABCC9O60706 1549 aa1.56□□□□□ -2.16
VPS35-207ENST00000568191 IGLV2-18A0A075B6J9 118 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 IGHV3-64DA0A0J9YX35 117 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 CCER2I3L3R5 266 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 LAD1O00515 517 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 ECI2O75521 394 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 STX11O75558 287 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 RBBP9O75884 186 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 KIAA0754O94854 1291 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 LALBAP00709 142 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 F10P00742 488 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 MT-ND3P03897 115 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 GIPP09681 153 aaPredicted RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 RALAP11233 206 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 RGS1Q08116 209 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 CCDC173Q0VFZ6 552 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 SPP2Q13103 211 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 FAM199XQ6PEV8 388 aaPredicted RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 LHFPL4Q7Z7J7 247 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 LRP11Q86VZ4 500 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 TTC5Q8N0Z6 440 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 STKLD1Q8NE28 680 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 PAQR8Q8TEZ7 354 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 STARD8Q92502 1023 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 NCLNQ969V3 563 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 RAB7BQ96AH8 199 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 MRPL38Q96DV4 380 aaKnown RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 RNF185Q96GF1 192 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 SAMD8Q96LT4 415 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 ZNF578Q96N58 590 aaPredicted RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 OR2M2Q96R28 347 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 MCHR1Q99705 422 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 SPIN2AQ99865 258 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 SPIN2BQ9BPZ2 258 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 CRNKL1Q9BZJ0 848 aaKnown RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 IFI27L2Q9H2X8 130 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 AIG1Q9NVV5 245 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 NINJ2Q9NZG7 142 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 C6orf203Q9P0P8 240 aaPredicted RBP1.55□□□□□ -2.16
VPS35-207ENST00000568191 UGT2A1Q9Y4X1 527 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 NEUROG3Q9Y4Z2 214 aa1.55□□□□□ -2.16
VPS35-207ENST00000568191 KIF26AQ9ULI4 1882 aaPredicted RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 A0A0G2JLM5 398 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 A0A0G2JRQ6 117 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 OR6C65A6NJZ3 312 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 VSTM2BA6NLU5 285 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 KIF2AO00139 706 aaPredicted RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 STX7O15400 261 aaKnown RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 DUX1O43812 170 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 HCN1O60741 890 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 MBD3O95983 291 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 UQCRBP14927 111 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 CRISP2P16562 243 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 PAICSP22234 425 aaKnown RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 HOXA9P31269 272 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 MAPK6Q16659 721 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 LINC01620Q4KN68 170 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 LINC00483Q53H64 154 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 C5orf47Q569G3 176 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 PIGGQ5H8A4 983 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 CASC10Q5T4H9 136 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 C1orf146Q5VVC0 180 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 LIPNQ5VXI9 398 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 ACSM5Q6NUN0 579 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 PLBD1Q6P4A8 553 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 SLC25A34Q6PIV7 304 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 SYT10Q6XYQ8 523 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 TMEM184AQ6ZMB5 413 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 C6orf223Q8N319 242 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 ANKRD20A12PQ8NF67 263 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms