RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RPS4Y1P22090 263 aaKnown RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 CTBP2P56545 445 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 TIGD2Q4W5G0 525 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 PDCD4Q53EL6 469 aaKnown RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 COX20Q5RI15 118 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 PDSS1Q5T2R2 415 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 ATG16L1Q676U5 607 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 ANKRD34AQ69YU3 496 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 GTF2IRD2BQ6EKJ0 949 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 TFAP2EQ6VUC0 442 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 PLEKHM3Q6ZWE6 761 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 EIF3MQ7L2H7 374 aaKnown RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 C16orf62Q7Z3J2 963 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 GTF2IRD2Q86UP8 949 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 RNF130Q86XS8 419 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 TUSC5Q8IXB3 177 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 ZNF619Q8N2I2 560 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 ANKFN1Q8N957 763 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 RFWD2Q8NHY2 731 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 IGFBPL1Q8WX77 278 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 ARL8AQ96BM9 186 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 OR52B2Q96RD2 323 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 MED18Q9BUE0 208 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 CCDC106Q9BWC9 280 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 OR10A4Q9H209 315 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 BCO1Q9HAY6 547 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 TIGARQ9NQ88 270 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 SDR39U1Q9NRG7 319 aaPredicted RBP13.24□□□□□ -0.29
CLN3-213ENST00000565047 ZNF226Q9NYT6 803 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 KLHL13Q9P2N7 655 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 EDARQ9UNE0 448 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 NF1P21359 2839 aa13.24□□□□□ -0.29
CLN3-213ENST00000565047 RAI1Q7Z5J4 1906 aaPredicted RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 A0A1W2PNR3 127 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 AGAP5A6NIR3 686 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 ZNF814B7Z6K7 855 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 SMAD9O15198 467 aaKnown RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 PLGP00747 810 aaPredicted RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 PSMB1P20618 241 aaKnown RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 KCNJ5P48544 419 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 KHKP50053 298 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 KEAP1Q14145 624 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 RNPS1Q15287 305 aaKnown RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 SYPL1Q16563 259 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 EXOC3L2Q2M3D2 409 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 ATAD3BQ5T9A4 648 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 FBXW10Q5XX13 1052 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 PPP4R4Q6NUP7 873 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 BEND4Q6ZU67 534 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 FCRLAQ7L513 359 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 GLB1L3Q8NCI6 653 aaPredicted RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 ATP6V1C2Q8NEY4 427 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 TRNT1Q96Q11 434 aaKnown RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 OR52E6Q96RD3 313 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 PANX1Q96RD7 426 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 PSD2Q9BQI7 771 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 KLHL4Q9C0H6 718 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 EXOSC3Q9NQT5 275 aaKnown RBP13.23□□□□□ -0.29
CLN3-213ENST00000565047 SLC35A3Q9Y2D2 325 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 GPR52Q9Y2T5 361 aa13.23□□□□□ -0.29
CLN3-213ENST00000565047 CYTIPO60759 359 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 SLC22A3O75751 556 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 PRKD3O94806 890 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 IL6P05231 212 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 GSNP06396 782 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 YES1P07947 543 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 PABPC4LP0CB38 370 aaKnown RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 CD99P14209 185 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 IDO1P14902 403 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 PPP3CBP16298 524 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 PGCP20142 388 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 EDNRAP25101 427 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 CHI3L1P36222 383 aaPredicted RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 KCNJ10P78508 379 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 TXNL4AP83876 142 aaKnown RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 LRRC74AQ0VAA2 488 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 FOXD4Q12950 439 aaPredicted RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 C3orf33Q6P1S2 294 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 LRRC74BQ6ZQY2 392 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 TMPPEQ6ZT21 453 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 HMGN2P46Q86SG4 172 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 LSRQ86X29 649 aaPredicted RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 ADGRG3Q86Y34 549 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 SLC43A2Q8N370 569 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 TMCO5AQ8N6Q1 288 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 PIWIL2Q8TC59 973 aaKnown RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 PIK3IP1Q96FE7 263 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 C12orf49Q9H741 205 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 BEX4Q9NWD9 120 aaPredicted RBP13.22□□□□□ -0.29
CLN3-213ENST00000565047 LIPT1Q9Y234 373 aa13.22□□□□□ -0.29
CLN3-213ENST00000565047 DSPPQ9NZW4 1301 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 SETD2Q9BYW2 2564 aaPredicted RBP13.21□□□□□ -0.29
CLN3-213ENST00000565047 IGHV3-15A0A0B4J1V0 119 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ERLIN1O75477 346 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 CYP7B1O75881 506 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ZCCHC18P0CG32 403 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 HOXB9P17482 250 aaPredicted RBP13.21□□□□□ -0.29
CLN3-213ENST00000565047 MRPL19P49406 292 aaKnown RBP13.21□□□□□ -0.29
CLN3-213ENST00000565047 CCR4P51679 360 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 RIPPLY3P57055 190 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms