RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KCNJ13O60928 360 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 PPP1R3DO95685 299 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 HPXP02790 462 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 PDGFAP04085 211 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 TPOP07202 933 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 SFRP4Q6FHJ7 346 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 HEPHL1Q6MZM0 1159 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 RANBP3LQ86VV4 465 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 SLC44A3Q8N4M1 653 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 OR2L8Q8NGY9 312 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 LRRC20Q8TCA0 184 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 THAP4Q8WY91 577 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 BPIFA2Q96DR5 249 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 MS4A4EQ96PG1 132 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 SDF2Q99470 211 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 SYNDIG1Q9H7V2 258 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 ERVMER34-1Q9H9K5 563 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 ADGRL4Q9HBW9 690 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 KRCC1Q9NPI7 259 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 PRSS16Q9NQE7 514 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 DIABLOQ9NR28 239 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 ZNF223Q9UK11 482 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 ATG2BQ96BY7 2078 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 ZNF860A6NHJ4 632 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 DUXAA6NLW8 204 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 MPC2O95563 127 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 ADRB1P08588 477 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 H2AFB2P0C5Z0 115 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 DNASE1P24855 282 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 DRD3P35462 400 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 NUDT1P36639 197 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 VASPP50552 380 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 EEF1A1P68104 462 aaKnown RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 CRYZQ08257 329 aaKnown RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 IRF4Q15306 451 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 GSG1Q2KHT4 349 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 DEFB134Q4QY38 66 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 CD276Q5ZPR3 534 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 FIGNL1Q6PIW4 674 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 LRRC25Q8N386 305 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 LNX2Q8N448 690 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 OR4E2Q8NGC2 313 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 OR51Q1Q8NH59 317 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 SPRTNQ9H040 489 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 WSB2Q9NYS7 404 aaPredicted RBP12.23□□□□□ -0.45
CLN3-210ENST00000563874 KCNE5Q9UJ90 142 aa12.23□□□□□ -0.45
CLN3-210ENST00000563874 SLC22A31A6NKX4 558 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 C1QTNF3-AMACRE9PGA6 284 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 FGF19O95750 216 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 CLTBP09497 229 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 AP2S1P53680 142 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 RPL6Q02878 288 aaKnown RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 SNTA1Q13424 505 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 SNTB2Q13425 540 aaKnown RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 EXOSC2Q13868 293 aaKnown RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 PXKQ7Z7A4 578 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF614Q8N883 585 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF296Q8WUU4 475 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 MSANTD3Q96H12 275 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 C10orf90Q96M02 699 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 OR2M2Q96R28 347 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 CMC2Q9NRP2 79 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 TRBV23OR9-2A0A075B6M9 112 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF593O00488 134 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 CFDP00746 253 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 LAMP2P13473 410 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 CAMK2DQ13557 499 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 GAB4Q2WGN9 574 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 TPRA1Q86W33 373 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 C12orf76Q8N812 135 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF527Q8NB42 609 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 OR2T35Q8NGX2 323 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 HMGB4Q8WW32 186 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZMYND19Q96E35 227 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 CHIAQ9BZP6 476 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 TRABD2BA6NFA1 517 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 RIIAD1A6NNX1 92 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 GNB5O14775 395 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 SHOXO15266 292 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 UBL3O95164 117 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 NAA10P41227 235 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 SELENOPP49908 381 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 SHC2P98077 582 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 FGL2Q14314 439 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF267Q14586 743 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 GPALPP1Q8IXQ4 340 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 OR4C6Q8NH72 309 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 ZNF671Q8TAW3 534 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 DERL3Q96Q80 235 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 FN3KQ9H479 309 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 MEPEQ9NQ76 525 aaPredicted RBP12.22□□□□□ -0.45
CLN3-210ENST00000563874 KCNN3Q9UGI6 736 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 SIGLEC7Q9Y286 467 aa12.22□□□□□ -0.45
CLN3-210ENST00000563874 RANBP2P49792 3224 aaKnown RBP12.21□□□□□ -0.45
CLN3-210ENST00000563874 LINC00862A6NCI5 91 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 SC5DO75845 299 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 HRGP04196 525 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 EPXP11678 715 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 NDUFS1P28331 727 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 MAGEB1P43366 347 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms