RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 KLF2Q9Y5W3 355 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 GPC6Q9Y625 555 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 AP4B1Q9Y6B7 739 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 HEATR5AQ86XA9 2040 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 KIAA1549Q9HCM3 1950 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 A0A0G2JPF8 293 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TMEM247A6NEH6 219 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 BBIP1A8MTZ0 92 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 EVPLLA8MZ36 301 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 HNRNPCL2B2RXH8 293 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 HNRNPCL3B7ZW38 293 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 PRSS44E7EML9 344 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 FXYD1O00168 92 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 GSC2O15499 205 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SEC14L5O43304 696 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 CYP7B1O75881 506 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 HNRNPCL4P0DMR1 293 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 ARAFP10398 606 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 NID1P14543 1247 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 PRKCAP17252 672 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 IL11P20809 199 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 GRNP28799 593 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 TIMP3P35625 211 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SUCLG1P53597 346 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 EEFSECP57772 596 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 MTPNP58546 118 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 RAC1P63000 192 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 KCNJ10P78508 379 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SELPLGQ14242 412 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SNCBQ16143 134 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 ADRM1Q16186 407 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TRMT5Q32P41 509 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 LIN52Q52LA3 116 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SLC25A53Q5H9E4 307 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 MRPL2Q5T653 305 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 RNF220Q5VTB9 566 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SNX32Q86XE0 403 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TREML1Q86YW5 311 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 PEX5LQ8IYB4 626 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 METTL25Q8N6Q8 603 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 C9orf106Q8NAJ2 232 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 NAXEQ8NCW5 288 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TNIP2Q8NFZ5 429 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 OR10Q1Q8NGQ4 319 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 LILRB4Q8NHJ6 448 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 FBXO27Q8NI29 283 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 NFKBIDQ8NI38 313 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 BBS10Q8TAM1 723 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 CA5BP1Q8WTZ4 195 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 ST8SIA1Q92185 356 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 SMPDL3BQ92485 455 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 WNT2BQ93097 391 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 ADGRG7Q96K78 797 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 DOCK7Q96N67 2140 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 THUMPD3Q9BV44 507 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 TRIM8Q9BZR9 551 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TMEM38AQ9H6F2 299 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 TMEM185BQ9H7F4 350 aa8.43□□□□□ -1.06
LDLR-211ENST00000560173 PRPF19Q9UMS4 504 aaKnown RBP8.43□□□□□ -1.06
LDLR-211ENST00000560173 ARHGAP21Q5T5U3 1957 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 INTS1Q8N201 2190 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 CDHR4A6H8M9 788 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 FAM90A27PA6NNH2 459 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 HSPB2A8KAH6 182 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 C5orf58C9J3I9 102 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 MRASO14807 208 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ADAMDEC1O15204 470 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 EFNA2O43921 213 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ADAM11O75078 769 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 PGM3O95394 542 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 TGM6O95932 706 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 THBS1P07996 1170 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 IL7RP16871 459 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 PGCP20142 388 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ME2P23368 584 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 COL8A1P27658 744 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ADH6P28332 368 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 HTR1EP28566 365 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 SHC1P29353 583 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 SLC6A8P48029 635 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 DLX5P56178 289 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 EEF1A1P68104 462 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 CDK6Q00534 326 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 SELENBP1Q13228 472 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 CAPRIN1Q14444 709 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 HSPB2Q16082 182 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 CTU2Q2VPK5 515 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 REP15Q6BDI9 236 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 REEP3Q6NUK4 255 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 PLXDC2Q6UX71 529 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 ZNF836Q6ZNA1 936 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 VRK2Q86Y07 508 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 PTOV1Q86YD1 416 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 GRAMD2AQ8IUY3 354 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 LIX1LQ8IVB5 337 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 PCYOX1LQ8NBM8 494 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 RBM15BQ8NDT2 890 aaKnown RBP8.42□□□□□ -1.06
LDLR-211ENST00000560173 OR52P1PQ8NH57 321 aa8.42□□□□□ -1.06
LDLR-211ENST00000560173 OR2V1Q8NHB1 315 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms