RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CHRM4P08173 479 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 ADH6P28332 368 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 S100A3P33764 101 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 MAGOHP61326 146 aaKnown RBP15.77■□□□□ 0.12
HDDC3-205ENST00000559898 PPP2R2AP63151 447 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 CBFBQ13951 182 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 MAPK11Q15759 364 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 Q71RC1 249 aaPredicted RBP15.77■□□□□ 0.12
HDDC3-205ENST00000559898 WFDC8Q8IUA0 241 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 ZNF619Q8N2I2 560 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 FAM71CQ8NEG0 241 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 TOR1AIP2Q8NFQ8 470 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 MRGPRX4Q96LA9 322 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 CCDC115Q96NT0 180 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 ACTR6Q9GZN1 396 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 SAP130Q9H0E3 1048 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 PAQR5Q9NXK6 330 aaPredicted RBP15.77■□□□□ 0.12
HDDC3-205ENST00000559898 PRSS50Q9UI38 385 aa15.77■□□□□ 0.12
HDDC3-205ENST00000559898 ROS1P08922 2347 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 ZNF814B7Z6K7 855 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 AP3D1O14617 1153 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 RYKP34925 604 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 NKX6-1P78426 367 aaPredicted RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 SELENBP1Q13228 472 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 ACKR1Q16570 336 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 GTDC1Q4AE62 458 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 PDSS1Q5T2R2 415 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 ANXA8L1Q5VT79 327 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 BHLHB9Q6PI77 547 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 DNAJC14Q6Y2X3 702 aaPredicted RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 PLEKHM3Q6ZWE6 761 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 GABRG1Q8N1C3 465 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 CIARTQ8N365 385 aaPredicted RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 CNOT9Q92600 299 aaKnown RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 ZNF75CPQ92670 426 aaPredicted RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 CPNE4Q96A23 557 aaPredicted RBP15.76■□□□□ 0.11
HDDC3-205ENST00000559898 S100PBPQ96BU1 408 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 TLCD1Q96CP7 247 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 OR5B2Q96R09 309 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 PSD2Q9BQI7 771 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 CTPS2Q9NRF8 586 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 KLHL13Q9P2N7 655 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 BTNL2Q9UIR0 455 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 PCDHGB4Q9UN71 923 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 WDR45Q9Y484 360 aa15.76■□□□□ 0.11
HDDC3-205ENST00000559898 UQCRHLA0A096LP55 91 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 CCDC154A6NI56 674 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 DUXAA6NLW8 204 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 RAMP1O60894 148 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 AK1P00568 194 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 CHI3L1P36222 383 aaPredicted RBP15.75■□□□□ 0.11
HDDC3-205ENST00000559898 MERTKQ12866 999 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 GPAT3Q53EU6 434 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 BEND6Q5SZJ8 279 aaPredicted RBP15.75■□□□□ 0.11
HDDC3-205ENST00000559898 BEND4Q6ZU67 534 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 RAB3IL1Q8TBN0 382 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 PLPPR2Q96GM1 343 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 ARL5BQ96KC2 179 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 OR52B2Q96RD2 323 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 OR11A1Q9GZK7 315 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 SLC38A1Q9H2H9 487 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 TMBIM4Q9HC24 238 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 HHATLQ9HCP6 504 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 GLRX2Q9NS18 164 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 EXD2Q9NVH0 621 aa15.75■□□□□ 0.11
HDDC3-205ENST00000559898 BEX4Q9NWD9 120 aaPredicted RBP15.75■□□□□ 0.11
HDDC3-205ENST00000559898 HDAC3O15379 428 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 PRKD3O94806 890 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 ADAP00813 363 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 PGRP06401 933 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 HOXB4P17483 251 aaPredicted RBP15.74■□□□□ 0.11
HDDC3-205ENST00000559898 CCNA2P20248 432 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 NTF4P34130 210 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 KHKP50053 298 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 MVDP53602 400 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 CLNS1AP54105 237 aaKnown RBP15.74■□□□□ 0.11
HDDC3-205ENST00000559898 TMEM201Q5SNT2 666 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 SEZ6L2Q6UXD5 910 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 ZNF621Q6ZSS3 439 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 EIF3MQ7L2H7 374 aaKnown RBP15.74■□□□□ 0.11
HDDC3-205ENST00000559898 OR9I1Q8NGQ6 314 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 LILRB1Q8NHL6 650 aaPredicted RBP15.74■□□□□ 0.11
HDDC3-205ENST00000559898 IGFBPL1Q8WX77 278 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 NEUROG1Q92886 237 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 ARL8AQ96BM9 186 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 OR52E6Q96RD3 313 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 CCDC106Q9BWC9 280 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 ACER3Q9NUN7 267 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 THAP1Q9NVV9 213 aa15.74■□□□□ 0.11
HDDC3-205ENST00000559898 SOX30O94993 753 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 FESP07332 822 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 YES1P07947 543 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 PSMB1P20618 241 aaKnown RBP15.73■□□□□ 0.11
HDDC3-205ENST00000559898 SLC7A1P30825 629 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 DIO1P49895 249 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 RAC3P60763 192 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 RNPS1Q15287 305 aaKnown RBP15.73■□□□□ 0.11
HDDC3-205ENST00000559898 Q5PR19 223 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 AP1ARQ63HQ0 302 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 NXNQ6DKJ4 435 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms