RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ACER3Q9NUN7 267 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 UTP20O75691 2785 aaKnown RBP12.93□□□□□ -0.34
USP3-205ENST00000557884 HIVEP3Q5T1R4 2406 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 MED12Q93074 2177 aa12.93□□□□□ -0.34
USP3-205ENST00000557884 PRORSD1PA6NEY8 169 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 CLCA1A8K7I4 914 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 M0QX08 132 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 EIF1AYO14602 144 aaKnown RBP12.92□□□□□ -0.34
USP3-205ENST00000557884 EFNA2O43921 213 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 SERPINB7O75635 380 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 MFN2O95140 757 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 NTN1O95631 604 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 ME2P23368 584 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 PTGER4P35408 488 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 MXRA7P84157 204 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 BCL2A1Q16548 175 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 ZSWIM7Q19AV6 140 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 SLC25A53Q5H9E4 307 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 INTS11Q5TA45 600 aaKnown RBP12.92□□□□□ -0.34
USP3-205ENST00000557884 MTFR2Q6P444 385 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 ERICH5Q6P6B1 374 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 DHRS4L2Q6PKH6 230 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 PLEKHM3Q6ZWE6 761 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 GGNQ86UU5 652 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 GRAMD2AQ8IUY3 354 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 SLC30A8Q8IWU4 369 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 ZNF440Q8IYI8 595 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 MICU2Q8IYU8 434 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 CADM2Q8N3J6 435 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 OR10Q1Q8NGQ4 319 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 TMEM234Q8WY98 164 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 TAMM41Q96BW9 452 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 MRGPRX4Q96LA9 322 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 TTYH2Q9BSA4 534 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 PINK1Q9BXM7 581 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 CTPS2Q9NRF8 586 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 SLC13A4Q9UKG4 626 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 PACSIN3Q9UKS6 424 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 AP3M1Q9Y2T2 418 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 DNAJC13O75165 2243 aa12.92□□□□□ -0.34
USP3-205ENST00000557884 TNFSF11O14788 317 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 EPPINO95925 133 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 HOXD4P09016 255 aaPredicted RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 UQCRBP14927 111 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 CCNA2P20248 432 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 ELK4P28324 431 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 ADH6P28332 368 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 ACAA2P42765 397 aaKnown RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 EIF1AXP47813 144 aaKnown RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 GSK3BP49841 420 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 RAC1P63000 192 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 SLC25A3Q00325 362 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 TMEM211Q6ICI0 200 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 PPP4R4Q6NUP7 873 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 SEM1Q6ZVN7 128 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 CHMP1BQ7LBR1 199 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 ZNF550Q7Z398 422 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 PATL1Q86TB9 770 aaKnown RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 CCDC71Q8IV32 467 aaPredicted RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 LILRA2Q8N149 483 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 ZPLD1Q8TCW7 415 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 PHF10Q8WUB8 498 aaKnown RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 ZNF845Q96IR2 970 aaPredicted RBP12.91□□□□□ -0.34
USP3-205ENST00000557884 ADA2Q9NZK5 511 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 STOML1Q9UBI4 398 aa12.91□□□□□ -0.34
USP3-205ENST00000557884 BAHCC1Q9P281 2608 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 A0A0J9YW62 118 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 ELOVL7A1L3X0 281 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 ETV2O00321 342 aaPredicted RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 SMSP52788 366 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 EEFSECP57772 596 aaKnown RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 COPZ1P61923 177 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 SELENBP1Q13228 472 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 VEZF1Q14119 521 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 SF3B4Q15427 424 aaKnown RBP eCLIP12.9□□□□□ -0.344e-7■■■■□ 21.7
USP3-205ENST00000557884 DUSP7Q16829 419 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 TMEM176BQ3YBM2 270 aaPredicted RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 LRRC23Q53EV4 343 aaPredicted RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 NSUN5P2Q63ZY6 315 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 CCDC80Q76M96 950 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 GRINAQ7Z429 371 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 MRGPRGQ86SM5 289 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 RNF148Q8N7C7 305 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 GPR32P1Q8NGA4 272 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 OR2V1Q8NHB1 315 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 SLC26A7Q8TE54 656 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 ITLN2Q8WWU7 325 aaPredicted RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 RND1Q92730 232 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 SDCCAG3Q96C92 435 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 DNAJA3Q96EY1 480 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 NSL1Q96IY1 281 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 KLHL15Q96M94 604 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 KCTD14Q9BQ13 255 aaPredicted RBP12.9□□□□□ -0.34
USP3-205ENST00000557884 WFDC6Q9BQY6 131 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 PRR14Q9BWN1 585 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 ALG2Q9H553 416 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 SPAG4Q9NPE6 437 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 TMEM181Q9P2C4 612 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 ABCD2Q9UBJ2 740 aa12.9□□□□□ -0.34
USP3-205ENST00000557884 DOPEY1Q5JWR5 2465 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms