RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	GIN1	Q9NXP7	522 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	KCNS2	Q9ULS6	477 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CCL27	Q9Y4X3	112 aa		11.16	□□□□□ -0.62
SHMT2-223	ENST00000556689	CAD	P27708	2225 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	NPIPB8	E9PQR5	432 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689		H7C417	338 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	SLC28A1	O00337	649 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	OIP5	O43482	229 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF16	P17020	682 aa	Predicted RBP	11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF83	P51522	516 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	EFNA4	P52798	201 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	NAA20	P61599	178 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	CHRNE	Q04844	493 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	CHRNB3	Q05901	458 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	KRT71	Q3SY84	523 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	SLC25A53	Q5H9E4	307 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	EXOSC6	Q5RKV6	272 aa	Known RBP	11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	LIPN	Q5VXI9	398 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	FBXW9	Q5XUX1	488 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	FAM166A	Q6J272	317 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ZNF544	Q6NX49	715 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	UBE2J2	Q8N2K1	259 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	OR5W2	Q8NH69	310 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	CDS1	Q92903	461 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	OR5B2	Q96R09	309 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	INPP5K	Q9BT40	448 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	CENPH	Q9H3R5	247 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	C1orf109	Q9NX04	203 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	PMF1-BGLAP	U3KQ54	211 aa		11.15	□□□□□ -0.62
SHMT2-223	ENST00000556689	ANK2	Q01484	3957 aa		11.15	□□□□□ -0.63
SHMT2-223	ENST00000556689	NPIPA5	A0A0B4J1W7	369 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	LOC100289279	A0A1B0GTE1	492 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	SMIM23	A6NLE4	172 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	CCT8L1P	A6NM43	557 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	NPIPA7	E9PJI5	369 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689		M0R1B8	84 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	SMAD9	O15198	467 aa	Known RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	ATP8B1	O43520	1251 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	RAD51D	O75771	328 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	HMGN2	P05204	90 aa	Known RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	NPIPA8	P0DM63	369 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	UROS	P10746	265 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	PRPH2	P23942	346 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	IGFBP5	P24593	272 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	RNF144A	P50876	292 aa	Predicted RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	ATP12A	P54707	1039 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	CBFB	Q13951	182 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	LASP1	Q14847	261 aa	Known RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	CFAP157	Q5JU67	520 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	CEP85L	Q5SZL2	805 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	FAM120AOS	Q5T036	256 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	TOR1AIP2	Q8NFQ8	470 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	RFWD2	Q8NHY2	731 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	ZNF524	Q96C55	264 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	FAM120B	Q96EK7	910 aa	Known RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	TSSK3	Q96PN8	268 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	CCT7	Q99832	543 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	SERINC1	Q9NRX5	453 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	ZCCHC3	Q9NUD5	404 aa	Known RBP	11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	DCDC2	Q9UHG0	476 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	BAIAP2L1	Q9UHR4	511 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	SLC25A15	Q9Y619	301 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	ATP23	Q9Y6H3	246 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	FREM1	Q5H8C1	2179 aa		11.14	□□□□□ -0.63
SHMT2-223	ENST00000556689	TLDC2	A0PJX2	215 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	RGS16	O15492	202 aa	Predicted RBP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	ZNF264	O43296	627 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	EIF4E2	O60573	245 aa	Known RBP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	IGHV3-9	P01782	118 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	MYL2	P10916	166 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	DDX5	P17844	614 aa	Known RBP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	HNF1A	P20823	631 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	GCA	P28676	217 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	APOBEC3A	P31941	199 aa	Predicted RBP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	CSNK2A1	P68400	391 aa	Predicted RBP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	SPOCK1	Q08629	439 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	PDE7A	Q13946	482 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	SQLE	Q14534	574 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	MLC1	Q15049	377 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	PDK3	Q15120	406 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	QPRT	Q15274	297 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	NDUFAF6	Q330K2	333 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	OR7E24	Q6IFN5	339 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	CDC73	Q6P1J9	531 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	C3orf33	Q6P1S2	294 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	B3GLCT	Q6Y288	498 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	TMPPE	Q6ZT21	453 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	IL17REL	Q6ZVW7	336 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	ZNF614	Q8N883	585 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	ACMSD	Q8TDX5	336 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	ADAMTS15	Q8TE58	950 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	MUS81	Q96NY9	551 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	C1QTNF6	Q9BXI9	259 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	ACTRT3	Q9BYD9	372 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	CHODL	Q9H9P2	273 aa		11.13	□□□□□ -0.63
SHMT2-223	ENST00000556689	FKRP	Q9H9S5	495 aa		11.13	□□□□□ -0.63

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