RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZNF208O43345 1280 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 FRS3O43559 492 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 NPIPB7O75200 414 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 TIPRLO75663 272 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 CYP7B1O75881 506 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 LDLRP01130 860 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 PNMTP11086 282 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ANPEPP15144 967 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF17P17021 662 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 FPR1P21462 350 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ELK4P28324 431 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 DNAJA1P31689 397 aaKnown RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 APOBEC1P41238 236 aaKnown RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 IDH2P48735 452 aaKnown RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 CD97P48960 835 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 DNASE1L1P49184 302 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 CLK1P49759 484 aaKnown RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 SESN3P58005 492 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 COPZ1P61923 177 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 MERTKQ12866 999 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 KCNAB2Q13303 367 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 PIN1Q13526 163 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 RAPSNQ13702 412 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF169Q14929 603 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 TRAM2Q15035 370 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 INPP5JQ15735 1006 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 NHSL2Q5HYW2 709 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF770Q6IQ21 691 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 C5orf46Q6UWT4 87 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 GDF7Q7Z4P5 450 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 GALNTL5Q7Z4T8 443 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 GTPBP8Q8N3Z3 284 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 SVOPLQ8N434 492 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 GATSQ8NAP1 163 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 OR6S1Q8NH40 331 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 POC1BQ8TC44 478 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 LIPHQ8WWY8 451 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 LRTOMTQ8WZ04 291 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 EXTL1Q92935 676 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 SLC41A3Q96GZ6 507 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 PKP2Q99959 881 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 KLHDC3Q9BQ90 382 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 TMEM43Q9BTV4 400 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 DSN1Q9H410 356 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF703Q9H7S9 590 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 C8orf4Q9NR00 106 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 MED17Q9NVC6 651 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 TUBA8Q9NY65 449 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-211ENST00000552338 MED11Q9P086 117 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 FBXL2Q9UKC9 423 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 CSAG2Q9Y5P2 127 aa8.69□□□□□ -1.02
LIMA1-211ENST00000552338 KIAA1549Q9HCM3 1950 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 GTF3C1Q12789 2109 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 LAMA5O15230 3695 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 A0A0G2JMM0 328 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 A0A1B0GVC2 190 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 A0A1W2PPB8 328 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 A0A1W2PRS3 328 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 C17orf51A8MQB3 221 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 KIR3DP1A8MWS1 328 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 hCG_2039718K7EN88 272 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ERVH48-1M5A8F1 160 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 GADD45GO95257 159 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ATP6V1G2O95670 118 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 IGHG3P01860 377 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 H1F0P07305 194 aaKnown RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 CHMP24386 653 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 DPP4P27487 766 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 RRM2P31350 389 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 MEOX1P50221 254 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 CDH12P55289 794 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 CTBP2P56545 445 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 B3GALT5-AS1P59052 145 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 TAS2R41P59536 307 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 SLC34A1Q06495 639 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 QPRTQ15274 297 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 RCN1Q15293 331 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 TOMM34Q15785 309 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 NDUFAF6Q330K2 333 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 SHQ1Q6PI26 577 aaKnown RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 CD300LDQ6UXZ3 194 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 DEF8Q6ZN54 512 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 PLEKHM3Q6ZWE6 761 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ADGRG3Q86Y34 549 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 HIPK1Q86Z02 1210 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 FAM98AQ8NCA5 519 aaKnown RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 OR4K17Q8NGC6 315 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 OR5K1Q8NHB7 308 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 VANGL1Q8TAA9 524 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 SLC7A13Q8TCU3 470 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 STK35Q8TDR2 534 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 ACOT11Q8WXI4 607 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 PNPLA2Q96AD5 504 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 GNRHR2Q96P88 292 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 BARD1Q99728 777 aaKnown RBP8.68□□□□□ -1.02
LIMA1-211ENST00000552338 FNDC11Q9BVV2 318 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 HES7Q9BYE0 225 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 POTEKPQ9BYX7 375 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 TTTY12Q9BZ98 90 aa8.68□□□□□ -1.02
LIMA1-211ENST00000552338 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms