RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CASP4P49662 377 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 PRKXP51817 358 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 FGL1Q08830 312 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 C1orf61Q13536 156 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 RIPK1Q13546 671 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 PDK3Q15120 406 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 CXCL17Q6UXB2 119 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 FRA10AC1Q70Z53 315 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 FBXO16Q8IX29 292 aaPredicted RBP3.05□□□□□ -1.92
VPS29-205ENST00000548539 SLC35F2Q8IXU6 374 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 GPR137CQ8N3F9 429 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 ZNF525Q8N782 197 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 EIF1ADQ8N9N8 165 aaKnown RBP3.05□□□□□ -1.92
VPS29-205ENST00000548539 OR8J1Q8NGP2 316 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 OR13F1Q8NGS4 319 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 PAQR8Q8TEZ7 354 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 RAPGEF5Q92565 580 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 SERAC1Q96JX3 654 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 SECISBP2Q96T21 854 aaKnown RBP3.05□□□□□ -1.92
VPS29-205ENST00000548539 KIR2DL4Q99706 377 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 CAPS2Q9BXY5 557 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 SMOXQ9NWM0 555 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 WARS2Q9UGM6 360 aaKnown RBP3.05□□□□□ -1.92
VPS29-205ENST00000548539 KLHL21Q9UJP4 597 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 CLEC4EQ9ULY5 219 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 TIMM10BQ9Y5J6 103 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 SLCO1B1Q9Y6L6 691 aa3.05□□□□□ -1.92
VPS29-205ENST00000548539 GON4LQ3T8J9 2241 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 KLF18A0A0U1RQI7 1052 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 FAM168BA1KXE4 195 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 B4DXG7 233 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 WWP2O00308 870 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 RGS16O15492 202 aaPredicted RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 TAPBPO15533 448 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 SURF6O75683 361 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 UGT2B17O75795 530 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 STSP08842 583 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 KLK2P20151 261 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 FGF9P31371 208 aaPredicted RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 MEOX2P50222 304 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 EFNA3P52797 238 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 HMGN5P82970 282 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 MESDQ14696 234 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 GANABQ14697 944 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 EXOC3L2Q2M3D2 409 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 SBK1Q52WX2 424 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 CEP55Q53EZ4 464 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 SPATA46Q5T0L3 261 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 SPINK14Q6IE38 97 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 BAIAP2L2Q6UXY1 529 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 MOB1BQ7L9L4 216 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 TRPM8Q7Z2W7 1104 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 APOBEC3FQ8IUX4 373 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 ZBED8Q8IZ13 594 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 OR5D13Q8NGL4 314 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 MAIP1Q8WWC4 291 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 SHC3Q92529 594 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 FAF2Q96CS3 445 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 IL4I1Q96RQ9 567 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 CCNL2Q96S94 520 aaPredicted RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 TMEM43Q9BTV4 400 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 NAT10Q9H0A0 1025 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 Q9H3A6 140 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 LRRN3Q9H3W5 708 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 LRRC40Q9H9A6 602 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 POPDC2Q9HBU9 364 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 POLE4Q9NR33 117 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 B3GNT2Q9NY97 397 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 C6orf203Q9P0P8 240 aaPredicted RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 EXTL2Q9UBQ6 330 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 APOBEC3BQ9UH17 382 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 CDH9Q9ULB4 789 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 UBQLN1Q9UMX0 589 aaKnown RBP3.04□□□□□ -1.92
VPS29-205ENST00000548539 MOKQ9UQ07 419 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 RASD1Q9Y272 281 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 PLLPQ9Y342 182 aa3.04□□□□□ -1.92
VPS29-205ENST00000548539 HCFC1P51610 2035 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 TRAV26-1A0A087WT03 109 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 A0A1B0GUS0 222 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 TUBAL3A6NHL2 446 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 CXCL11O14625 94 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 HCN1O60741 890 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 DIRAS1O95057 198 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 IGLL1P15814 213 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 IMPDH1P20839 514 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 GCAP28676 217 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 GRIA1P42261 906 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 HLCSP50747 726 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 TNFRSF17Q02223 184 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 SLC10A7Q0GE19 358 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 ZMYND11Q15326 602 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 PRR4Q16378 134 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 AANATQ16613 207 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 OR2B11Q5JQS5 317 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 UTF1Q5T230 341 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 PDZK1Q5T2W1 519 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 CCDC137Q6PK04 289 aaKnown RBP3.03□□□□□ -1.92
VPS29-205ENST00000548539 Q6ZPB1 254 aaPredicted RBP3.03□□□□□ -1.92
VPS29-205ENST00000548539 LCA5Q86VQ0 697 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 NRMQ8IXM6 262 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms