RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PAQR7Q86WK9 346 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 FCAMRQ8WWV6 532 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 CMKLR1Q99788 373 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ORAI3Q9BRQ5 295 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 PIGUQ9H490 435 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 RANGRFQ9HD47 186 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 ALKBH4Q9NXW9 302 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 DIMT1Q9UNQ2 313 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 SLC35A3Q9Y2D2 325 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ECDO95905 644 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 SNRPBP14678 240 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 HCCSP53701 268 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ACTA2P62736 377 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ACTG2P63267 376 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 GALK2Q01415 458 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 TBC1D25Q3MII6 688 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ULK3Q6PHR2 472 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 SLC35F2Q8IXU6 374 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 CASTOR1Q8WTX7 329 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 GHSRQ92847 366 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 ZNF707Q96C28 371 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 ZNF486Q96H40 463 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 TNS1Q9HBL0 1735 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 HINT3Q9NQE9 182 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 SERINC1Q9NRX5 453 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 SPTA1P02549 2419 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 A0A1W2PPL8 197 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 A0A1W2PS29 197 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 GTF2F2P13984 249 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 VASPP50552 380 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 PRKXP51817 358 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 SYT9Q86SS6 491 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 RBM12BQ8IXT5 1001 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 ADGRF3Q8IZF5 1079 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 RNASE11Q8TAA1 199 aaKnown RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 RBP7Q96R05 134 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 SDF2Q99470 211 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 CDCA3Q99618 268 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 THAP7Q9BT49 309 aaPredicted RBP14.57□□□□□ -0.08
CUX1-211ENST00000546411 ATG5Q9H1Y0 275 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 SLC52A3Q9NQ40 469 aa14.57□□□□□ -0.08
CUX1-211ENST00000546411 TRBV5-3A0A0A0MS03 114 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 TLX3O43711 291 aaPredicted RBP14.56□□□□□ -0.08
CUX1-211ENST00000546411 DOK2O60496 412 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 S1PR1P21453 382 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 SOX18P35713 384 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 PITPNBP48739 271 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 OXA1LQ15070 435 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 FAM69BQ5VUD6 431 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 NKAIN2Q5VXU1 208 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 FOXRED2Q8IWF2 684 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 ZNF511Q8NB15 262 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 GPR32P1Q8NGA4 272 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 OR2T4Q8NH00 348 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 YIPF6Q96EC8 236 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 SLC6A14Q9UN76 642 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 PLXNA1Q9UIW2 1896 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 TEX13CA0A0J9YWL9 993 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 A6NL46 340 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 DUX1O43812 170 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 RBBP9O75884 186 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 OR8G3PP0DMU2 310 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 MAKP20794 623 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 DNASE1P24855 282 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 ZNF836Q6ZNA1 936 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 TM9SF4Q92544 642 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 PLA2G12AQ9BZM1 189 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 FBRSQ9HAH7 460 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 SLC6A20Q9NP91 592 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 DCDC2BA2VCK2 349 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 MAPK3P27361 379 aaPredicted RBP14.56□□□□□ -0.08
CUX1-211ENST00000546411 AQP2P41181 271 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 PSMA6P60900 246 aaKnown RBP14.56□□□□□ -0.08
CUX1-211ENST00000546411 CD300CQ08708 224 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 C3orf38Q5JPI3 329 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 ITPKCQ96DU7 683 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 CBLCQ9ULV8 474 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 CACNA1EQ15878 2313 aa14.56□□□□□ -0.08
CUX1-211ENST00000546411 C5orf51A6NDU8 294 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 H2AFB2P0C5Z0 115 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 GABRA5P31644 462 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 FOXK2Q01167 660 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 ZP2Q05996 745 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 ZMAT1Q5H9K5 638 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 OTPQ5XKR4 325 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 ARL14Q8N4G2 192 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 TMEM41AQ96HV5 264 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 C19orf43Q9BQ61 176 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 DOCK6Q96HP0 2047 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 HTR3EA5X5Y0 456 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 M0R082 166 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 APBB3O95704 486 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 TGFBR2P37173 567 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 MRPL19P49406 292 aaKnown RBP14.55□□□□□ -0.08
CUX1-211ENST00000546411 LSM11P83369 360 aaKnown RBP eCLIP14.55□□□□□ -0.086e-6■■■□□ 16.2
CUX1-211ENST00000546411 DUSP6Q16828 381 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 ZXDCQ2QGD7 858 aaPredicted RBP14.55□□□□□ -0.08
CUX1-211ENST00000546411 SLC16A12Q6ZSM3 486 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 ZNF566Q969W8 418 aa14.55□□□□□ -0.08
CUX1-211ENST00000546411 MRGPRX1Q96LB2 322 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms