RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 MAP1AP78559 2803 aaPredicted RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 A0A0J9YW62 118 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 AGAP5A6NIR3 686 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 A6NNC1 897 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CXCL13O43927 109 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 SS18L1O75177 396 aaPredicted RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CYP7B1O75881 506 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 GSNP06396 782 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 DBIP07108 87 aaKnown RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 IL7RP16871 459 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 IL11P20809 199 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 SFTPDP35247 375 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 PGM1P36871 562 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CDKN2CP42773 168 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CRATP43155 626 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 KIR2DL2P43627 348 aaPredicted RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CLK1P49759 484 aaKnown RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 MAP2K6P52564 334 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 RAC3P60763 192 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 DSTNP60981 165 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 FUT5Q11128 374 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 SQLEQ14534 574 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 GUSBP1Q15486 140 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 TMEM176BQ3YBM2 270 aaPredicted RBP10.59□□□□□ -0.71
HDAC4-216ENST00000544989 PRAMEF8Q5VWM4 474 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 PRAMEF7Q5VXH5 474 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 STK32CQ86UX6 486 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 ZZZ3Q8IYH5 903 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 ZNF563Q8TA94 476 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 WDR60Q8WVS4 1066 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 SLC38A1Q9H2H9 487 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 TMEM185BQ9H7F4 350 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 ACER3Q9NUN7 267 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 KCNE5Q9UJ90 142 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 CORO2BQ9UQ03 480 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 KIAA1549Q9HCM3 1950 aa10.59□□□□□ -0.71
HDAC4-216ENST00000544989 A0A096LPI6 279 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 FAM221AA4D161 298 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 FAAHO00519 579 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CASKO14936 926 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 OIP5O43482 229 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CTAG2O75638 210 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 AQP8O94778 261 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 NID1P14543 1247 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 RPS4Y1P22090 263 aaKnown RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CPOXP36551 454 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CD79BP40259 229 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 KCNJ5P48544 419 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 SESN3P58005 492 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CSNK2A1P68400 391 aaPredicted RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 SIRPAP78324 504 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CHRNEQ04844 493 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 MERTKQ12866 999 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 LARS2Q15031 903 aaKnown RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 TOMM34Q15785 309 aaPredicted RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 MAPK14Q16539 360 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 SYPL1Q16563 259 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF239Q16600 458 aaKnown RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 LIN52Q52LA3 116 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 HSP90B2PQ58FF3 399 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 VWA1Q6PCB0 445 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 BLOC1S3Q6QNY0 202 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 DNAJC14Q6Y2X3 702 aaPredicted RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 GRINAQ7Z429 371 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 BTLAQ7Z6A9 289 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 CDH24Q86UP0 819 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 ANKFN1Q8N957 763 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 OR9I1Q8NGQ6 314 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 GTF2H4Q92759 462 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 VPS33AQ96AX1 596 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 SPDL1Q96EA4 605 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 PLSCR4Q9NRQ2 329 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 RASSF1Q9NS23 344 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 DNAJB12Q9NXW2 375 aaKnown RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF232Q9UNY5 417 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 IFT52Q9Y366 437 aa10.58□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF469Q96JG9 3925 aaPredicted RBP10.58□□□□□ -0.72
HDAC4-216ENST00000544989 A0A0G2JPF8 293 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 SH3D21A4FU49 640 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 HNRNPCL2B2RXH8 293 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 HNRNPCL3B7ZW38 293 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 C16orf97H3BN30 126 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CLIC1O00299 241 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 HNRNPCL1O60812 293 aaKnown RBP10.57□□□□□ -0.72
HDAC4-216ENST00000544989 EDF1O60869 148 aaKnown RBP10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PRKD3O94806 890 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CGAP01215 116 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 THBS1P07996 1170 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CHRM4P08173 479 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 HNRNPCL4P0DMR1 293 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 POU2F1P14859 743 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PPP3CBP16298 524 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 RGNQ15493 299 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 NDUFAF6Q330K2 333 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 COX20Q5RI15 118 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 TMEM201Q5SNT2 666 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 LRIF1Q5T3J3 769 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 METTL21CQ5VZV1 264 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 FBXW10Q5XX13 1052 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PLXDC2Q6UX71 529 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms