RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NPSR1Q6W5P4 371 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 PDIK1LQ8N165 341 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 C1orf162Q8NEQ5 155 aaPredicted RBP7.95□□□□□ -1.14
USP28-205ENST00000537706 ZNF675Q8TD23 568 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 ACTRT2Q8TDY3 377 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 RDH5Q92781 318 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 VSTM2LQ96N03 204 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 ANKRD27Q96NW4 1050 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 SERPINI1Q99574 410 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 KATNB1Q9BVA0 655 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 ZNF416Q9BWM5 594 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 FAIM2Q9BWQ8 316 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 FAM107BQ9H098 131 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 C3orf14Q9HBI5 128 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 Q9N2J8 555 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 PPANQ9NQ55 473 aaKnown RBP7.95□□□□□ -1.14
USP28-205ENST00000537706 SLC17A5Q9NRA2 495 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 MED17Q9NVC6 651 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 OXSMQ9NWU1 459 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 PCDHA9Q9Y5H5 950 aa7.95□□□□□ -1.14
USP28-205ENST00000537706 BIRC6Q9NR09 4857 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 TCRBV7S3A2A0A539 114 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 SEMA3DO95025 777 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 GBAP04062 536 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 RFX3P48380 749 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 SEC24CP53992 1094 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 RAG2P55895 527 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 SRSF4Q08170 494 aaKnown RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 E2F2Q14209 437 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 PLPPR5Q32ZL2 321 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 TMEM176BQ3YBM2 270 aaPredicted RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 KPRPQ5T749 579 aaPredicted RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 RHOUQ7L0Q8 258 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 SPATA21Q7Z572 469 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 SAMD14Q8IZD0 417 aaPredicted RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 ZFP90Q8TF47 636 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 DVL3Q92997 716 aaPredicted RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 POP5Q969H6 163 aaKnown RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 ARL5BQ96KC2 179 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 RABEP2Q9H5N1 569 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 ZNF665Q9H7R5 613 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 GIMAP4Q9NUV9 329 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 INTS9Q9NV88 658 aaKnown RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 ADAM29Q9UKF5 820 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 NUP50Q9UKX7 468 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 NOSIPQ9Y314 301 aaKnown RBP7.94□□□□□ -1.14
USP28-205ENST00000537706 ANGPTL3Q9Y5C1 460 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 VWFP04275 2813 aa7.94□□□□□ -1.14
USP28-205ENST00000537706 TMEM120BA0PK00 339 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 C9JVG2 144 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 LYNX1G3V0Z9 82 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PLPP2O43688 288 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 CYTIPO60759 359 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PRB2P02812 416 aaPredicted RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 LTA4HP09960 611 aaKnown RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 LYNX1P0DP58 116 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PGAM1P18669 254 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 NPR2P20594 1047 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 GABRB3P28472 473 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 GCAP28676 217 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 MAPK12P53778 367 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 RAC3P60763 192 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 MRPS35P82673 323 aaKnown RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 PRR5P85299 388 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 ADGRG3Q86Y34 549 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 CNTN4Q8IWV2 1026 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 RNF175Q8N4F7 328 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 OR4N2Q8NGD1 307 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PYROXD1Q8WU10 500 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 SLC9A6Q92581 669 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 ESAMQ96AP7 390 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 ZNF775Q96BV0 537 aaPredicted RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 CHMP6Q96FZ7 201 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 RACGAP1Q9H0H5 632 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 ACSS3Q9H6R3 686 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 TCF7L1Q9HCS4 588 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PSMC3IPQ9P2W1 217 aaPredicted RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 OPTCQ9UBM4 332 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 UPB1Q9UBR1 384 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 DCTN4Q9UJW0 460 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 RRP15Q9Y3B9 282 aaKnown RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 IGHV3-15A0A0B4J1V0 119 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 CLPSL1A2RUU4 121 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 G3V4G9 280 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 UTS2O95399 124 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 IGHV3-9P01782 118 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 KLK1P06870 262 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 ADRA2AP08913 450 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 DRD4P21917 467 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 PSMA4P25789 261 aaKnown RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 SLC12A2P55011 1212 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 LMO4P61968 165 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 LTB4RQ15722 352 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 MSS51Q4VC12 460 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 FBXO48Q5FWF7 155 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 LIPJQ5W064 366 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 R3HCC1LQ7Z5L2 792 aaKnown RBP7.93□□□□□ -1.14
USP28-205ENST00000537706 MISPQ8IVT2 679 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 WDR31Q8NA23 367 aa7.93□□□□□ -1.14
USP28-205ENST00000537706 CKAP2Q8WWK9 683 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms