RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 OR5M11Q96RB7 305 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 PLIN2Q99541 437 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 TMEM121Q9BTD3 319 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 GCOM2Q9BZD3 368 aaPredicted RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 IKZF5Q9H5V7 419 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 FN3KRPQ9HA64 309 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 PDFQ9HBH1 243 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 UFSP2Q9NUQ7 469 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 CLEC4AQ9UMR7 237 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 MOKQ9UQ07 419 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 TDRD6O60522 2096 aaKnown RBP3.29□□□□□ -1.88
CD44-223ENST00000526553 KIAA0586Q9BVV6 1533 aa3.29□□□□□ -1.88
CD44-223ENST00000526553 PNPLA6Q8IY17 1366 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 TNIKQ9UKE5 1360 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 FRMPD4Q14CM0 1322 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 RIMS1Q86UR5 1692 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 OR6C65A6NJZ3 312 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 A8MX80 341 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 H0Y9J4 135 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 OR7A17O14581 309 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 PRRG1O14668 218 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 HDAC3O15379 428 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 MSH4O15457 936 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 CDH5P33151 784 aaPredicted RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 RPL4P36578 427 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 POU3F4P49335 361 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 NOVA1P51513 510 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 OTUD4Q01804 1114 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 EWSR1Q01844 656 aaKnown RBP eCLIP3.28□□□□□ -1.88
CD44-223ENST00000526553 PAN3Q58A45 887 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 C9orf129Q5T035 196 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 CYS1Q717R9 158 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 RUFY3Q7L099 469 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 KIAA1328Q86T90 577 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 SLC34A3Q8N130 599 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 DHRSXQ8N5I4 330 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 Q8N9G6 341 aaPredicted RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 PIGCQ92535 297 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 CNDP1Q96KN2 507 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 AMDHD1Q96NU7 426 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 SLC6A7Q99884 636 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 MAPKAP1Q9BPZ7 522 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 PKIBQ9C010 78 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 IL17CQ9P0M4 197 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 PCSK1NQ9UHG2 260 aa3.28□□□□□ -1.88
CD44-223ENST00000526553 EPRSP07814 1512 aaKnown RBP3.28□□□□□ -1.88
CD44-223ENST00000526553 USP6P35125 1406 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 UACAQ9BZF9 1416 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 METP08581 1390 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 CFAP43Q8NDM7 1665 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 XKRY2A2RUG3 117 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 METTL21EPA6NDL7 271 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 ZSCAN5BA6NJL1 495 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 SLC35E2P0CK97 266 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 CT45A10P0DMU9 189 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 BDKRB1P46663 353 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 HSPA2P54652 639 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 ISXQ2M1V0 245 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 QRICH1Q2TAL8 776 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 TEX44Q53QW1 395 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 C10orf120Q5SQS8 335 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 ACSM5Q6NUN0 579 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 NANOGNBQ7Z5D8 188 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 CCDC50Q8IVM0 306 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 VSTM4Q8IW00 320 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 OR4D5Q8NGN0 318 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 RPL3LQ92901 407 aaKnown RBP3.27□□□□□ -1.89
CD44-223ENST00000526553 C12orf66Q96MD2 445 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 EDEM2Q9BV94 578 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 OPN3Q9H1Y3 402 aaPredicted RBP3.27□□□□□ -1.89
CD44-223ENST00000526553 TM9SF3Q9HD45 589 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 SMOXQ9NWM0 555 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 NMRK1Q9NWW6 199 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 HYPKQ9NX55 129 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 PTBP2Q9UKA9 531 aaKnown RBP3.27□□□□□ -1.89
CD44-223ENST00000526553 CDH9Q9ULB4 789 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 RASD1Q9Y272 281 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 OARD1Q9Y530 152 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 CD109Q6YHK3 1445 aa3.27□□□□□ -1.89
CD44-223ENST00000526553 IQGAP2Q13576 1575 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 EPOPA6NHQ4 379 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 UGT2B17O75795 530 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 LRATO95237 230 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 LYPD3O95274 346 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 PNMTP11086 282 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 LAP3P28838 519 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 HPCAL1P37235 193 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 RPL8P62917 257 aaKnown RBP3.26□□□□□ -1.89
CD44-223ENST00000526553 PUDPQ08623 228 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 CD47Q08722 323 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 RAB40BQ12829 278 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 IL18R1Q13478 541 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 NDUFA9Q16795 377 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 GGTA1PQ4G0N0 100 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 BEND3Q5T5X7 828 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 PVRIGQ6DKI7 326 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 ZSCAN25Q6NSZ9 544 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 ZYG11AQ6WRX3 759 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 CCDC80Q76M96 950 aa3.26□□□□□ -1.89
CD44-223ENST00000526553 APOBEC3FQ8IUX4 373 aaKnown RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms