RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 NAT10Q9H0A0 1025 aaKnown RBP2.8□□□□□ -1.96
CD44-215ENST00000525241 ZNF385DQ9H6B1 395 aa2.8□□□□□ -1.96
CD44-215ENST00000525241 NARFLQ9H6Q4 476 aa2.8□□□□□ -1.96
CD44-215ENST00000525241 COQ10BQ9H8M1 238 aa2.8□□□□□ -1.96
CD44-215ENST00000525241 POLE3Q9NRF9 147 aa2.8□□□□□ -1.96
CD44-215ENST00000525241 UGT2A1Q9Y4X1 527 aa2.8□□□□□ -1.96
CD44-215ENST00000525241 SF3B1O75533 1304 aaKnown RBP eCLIP2.79□□□□□ -1.96
CD44-215ENST00000525241 KIF2AO00139 706 aaPredicted RBP2.79□□□□□ -1.96
CD44-215ENST00000525241 TRAF3IP2O43734 574 aaPredicted RBP2.79□□□□□ -1.96
CD44-215ENST00000525241 PRKYO43930 277 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 UFL1O94874 794 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 HTR1EP28566 365 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 CTRLP40313 264 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 MDH1P40925 334 aaKnown RBP2.79□□□□□ -1.96
CD44-215ENST00000525241 PRKXP51817 358 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 PLK1P53350 603 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 UCNP55089 124 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 CCDC173Q0VFZ6 552 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 AFTPHQ6ULP2 937 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 VRK2Q86Y07 508 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 LRRC43Q8N309 656 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 OR5L2Q8NGL0 311 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 MYDGFQ969H8 173 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 SDHCQ99643 169 aaPredicted RBP2.79□□□□□ -1.96
CD44-215ENST00000525241 NXF3Q9H4D5 531 aaKnown RBP2.79□□□□□ -1.96
CD44-215ENST00000525241 AIPL1Q9NZN9 384 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 GNG12Q9UBI6 72 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 AURKCQ9UQB9 309 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 ERVW-1Q9UQF0 538 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 ALG6Q9Y672 507 aa2.79□□□□□ -1.96
CD44-215ENST00000525241 TTC21BQ7Z4L5 1316 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 G3V4G9 280 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 ZSCAN12O43309 604 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 NPIPB7O75200 414 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 SNAPINO95295 136 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 ASNSP08243 561 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 HPCAL1P37235 193 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 HNRNPA3P51991 378 aaKnown RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 CSNK1G2P78368 415 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 MECOMQ03112 1051 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 PJVKQ0ZLH3 352 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 EIF4EBP2Q13542 120 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 NCR3LG1Q68D85 454 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 FAM71F2Q6NXP2 309 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 Q6P435 159 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 CCDC137Q6PK04 289 aaKnown RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 ACOT7LQ6ZUV0 252 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 TPRA1Q86W33 373 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 ZNF433Q8N7K0 673 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 SUMF2Q8NBJ7 301 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 ZNF740Q8NDX6 193 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 OR56B4Q8NH76 319 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 NEIL3Q8TAT5 605 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 DNAJA4Q8WW22 397 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 SPRYD4Q8WW59 207 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 CHCHD10Q8WYQ3 142 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 OSTF1Q92882 214 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 RPL3LQ92901 407 aaKnown RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 PGLYRP4Q96LB8 373 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 NRTNQ99748 197 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 RHBGQ9H310 441 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 ZNF331Q9NQX6 463 aaPredicted RBP2.78□□□□□ -1.96
CD44-215ENST00000525241 MMP26Q9NRE1 261 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 SIGLEC8Q9NYZ4 499 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 BTNL2Q9UIR0 455 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 SLCO1B1Q9Y6L6 691 aa2.78□□□□□ -1.96
CD44-215ENST00000525241 CDC42BPBQ9Y5S2 1711 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 A0A1W2PNV4 684 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 VSTM2BA6NLU5 285 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 A8MUA0 341 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 E7ESA3 106 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 PPIAL4DF5H284 164 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 MAPK13O15264 365 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 HCRTR1O43613 425 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 ZNF780AO75290 641 aaPredicted RBP2.77□□□□□ -1.97
CD44-215ENST00000525241 TM7SF2O76062 418 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 MFN2O95140 757 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 H2BFMP0C1H6 154 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 PSG2P11465 335 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 AP3M2P53677 418 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 HSPA2P54652 639 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 CNTN2Q02246 1040 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 MXD4Q14582 209 aaPredicted RBP2.77□□□□□ -1.97
CD44-215ENST00000525241 MPPED2Q15777 294 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 CCDC57Q2TAC2 916 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 GGTA1PQ4G0N0 100 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 ATL3Q6DD88 541 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 MTURNQ8N3F0 131 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 Q8N9L7 120 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 OR10A7Q8NGE5 316 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 RAET1EQ8TD07 263 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 TCTEX1D2Q8WW35 142 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 SRSF12Q8WXF0 261 aaKnown RBP2.77□□□□□ -1.97
CD44-215ENST00000525241 FAM3CQ92520 227 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 RDH5Q92781 318 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 GAL3ST1Q99999 423 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 TMEM117Q9H0C3 514 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 DPH5Q9H2P9 285 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 SMYD3Q9H7B4 428 aa2.77□□□□□ -1.97
CD44-215ENST00000525241 A0A1B0GUA9 196 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms