RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 C1QTNF12Q5T7M4 302 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 COX18Q8N8Q8 333 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 C1orf162Q8NEQ5 155 aaPredicted RBP9.55□□□□□ -0.88
DDX41-216ENST00000513562 NUP43Q8NFH3 380 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 OR5B2Q96R09 309 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 VRK1Q99986 396 aaPredicted RBP9.55□□□□□ -0.88
DDX41-216ENST00000513562 ZNF696Q9H7X3 374 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 SLC17A5Q9NRA2 495 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 MOKQ9UQ07 419 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 AMDHD2Q9Y303 409 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 NOSIPQ9Y314 301 aaKnown RBP9.55□□□□□ -0.88
DDX41-216ENST00000513562 PLCE1Q9P212 2302 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 PCNX3Q9H6A9 2034 aa9.55□□□□□ -0.88
DDX41-216ENST00000513562 B9A039 149 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 PDPK1O15530 556 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 PDE5AO76074 875 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SUPT7LO94864 414 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SNUPNO95149 360 aaKnown RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 SLU7O95391 586 aaKnown RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 ENO1P06733 434 aaKnown RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 ALOX5P09917 674 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 NTF4P34130 210 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SERPINF1P36955 418 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 DIO1P49895 249 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 PPOXP50336 477 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 RNF144AP50876 292 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 IDH3GP51553 393 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 PLTPP55058 493 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 HILS1P60008 231 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 CSNK2A1P68400 391 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 SCGB2A2Q13296 93 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 EFNB3Q15768 340 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 NDUFAF6Q330K2 333 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 UNC50Q53HI1 259 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SPDYAQ5MJ70 313 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 ZNF678Q5SXM1 525 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.54□□□□□ -0.88
DDX41-216ENST00000513562 ZCCHC12Q6PEW1 402 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 UGT2A3Q6UWM9 527 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 TMPPEQ6ZT21 453 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 USP43Q70EL4 1123 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SZRD1Q7Z422 152 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 ZNF527Q8NB42 609 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 TOR1AIP2Q8NFQ8 470 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 FAM76AQ8TAV0 307 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 FBXO25Q8TCJ0 367 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 ZNF418Q8TF45 676 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 OTUB1Q96FW1 271 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 C16orf58Q96GQ5 468 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 ZNF764Q96H86 408 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 TMEM237Q96Q45 408 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 SNX18Q96RF0 628 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 RBM4Q9BWF3 364 aaKnown RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 BTBD2Q9BX70 525 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 PLK3Q9H4B4 646 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 CA10Q9NS85 328 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 DCTN4Q9UJW0 460 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 POLR3HQ9Y535 204 aaPredicted RBP9.54□□□□□ -0.88
DDX41-216ENST00000513562 TIMM22Q9Y584 194 aa9.54□□□□□ -0.88
DDX41-216ENST00000513562 CCDC151A5D8V7 595 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 H3BNH8 94 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 TRIM77I1YAP6 450 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 TMPRSS2O15393 492 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 RAD51CO43502 376 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 MRPL33O75394 65 aaKnown RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 DAOP14920 347 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 CREB1P16220 341 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 PGCP20142 388 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 ARFIP2P53365 341 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 SLC16A1P53985 500 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 POU6F2P78424 691 aaPredicted RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 DEFA6Q01524 100 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 CAV1Q03135 178 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 LCP2Q13094 533 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 QPRTQ15274 297 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 TIGD2Q4W5G0 525 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 AWAT1Q58HT5 328 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 ZDHHC24Q6UX98 284 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 LRIG3Q6UXM1 1119 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 SPATA19Q7Z5L4 167 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 PEG10Q86TG7 708 aaKnown RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 MTDHQ86UE4 582 aaKnown RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 OR52E4Q8NGH9 312 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 OR5W2Q8NH69 310 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 ZFP28Q8NHY6 868 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 CIDECQ96AQ7 238 aaPredicted RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 ARL8AQ96BM9 186 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 KCNA7Q96RP8 456 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 STACQ99469 402 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 HOXD1Q9GZZ0 328 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 IQCGQ9H095 443 aaKnown RBP9.53□□□□□ -0.88
DDX41-216ENST00000513562 SAP130Q9H0E3 1048 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 DUSP22Q9NRW4 184 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 GIN1Q9NXP7 522 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 STK38LQ9Y2H1 464 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 SPEF1Q9Y4P9 236 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 SAR1BQ9Y6B6 198 aa9.53□□□□□ -0.88
DDX41-216ENST00000513562 ESPNB1AK53 854 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 B4DSR2 109 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 NPIPB8E9PQR5 432 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms