RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ARHGAP9Q9BRR9 750 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 MED18Q9BUE0 208 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 EMC7Q9NPA0 242 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 HINT3Q9NQE9 182 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 DHDHQ9UQ10 334 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 NTNG1Q9Y2I2 539 aa7.84□□□□□ -1.15
LIMCH1-216ENST00000512820 EIF1AYO14602 144 aaKnown RBP7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 AKR7A2O43488 359 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 VNN2O95498 520 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 FBXO45P0C2W1 286 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 S1PR1P21453 382 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 ARFRP1Q13795 201 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 TOMM20Q15388 145 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 KCTD18Q6PI47 426 aaPredicted RBP7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 ADAMTSL4Q6UY14 1074 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM64Q6YI46 380 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM17Q86X19 198 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 NLGN4YQ8NFZ3 816 aaPredicted RBP7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 VN1R2Q8NFZ6 395 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 MED30Q96HR3 178 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 TIMM29Q9BSF4 260 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 IL21RQ9HBE5 538 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 TREM1Q9NP99 234 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 GLTPQ9NZD2 209 aa7.84□□□□□ -1.16
LIMCH1-216ENST00000512820 ZC3H12DA2A288 527 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SOX1O00570 391 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 HBQ1P09105 142 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MRPS10P82664 201 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 P2RY14Q15391 338 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ASTLQ6HA08 431 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 RPL22L1Q6P5R6 122 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 DNM1P34Q6PK57 102 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM111BQ6SJ93 734 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2L3Q8NG85 312 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 OR5J2Q8NH18 312 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 LGALS14Q8TCE9 139 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC25A19Q9HC21 320 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 FGF20Q9NP95 211 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MBD1Q9UIS9 605 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PPIL1Q9Y3C6 166 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A1W2PR48 441 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 RHPN2P1A8MT19 583 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 F5H0A9 414 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRAMEF4O60810 478 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SC5DO75845 299 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 AHSA1O95433 338 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PSMB1P20618 241 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 EIF1AXP47813 144 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRPS1P60891 318 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 RAB11BQ15907 218 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 RPE65Q16518 533 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRAMEF8Q5VWM4 474 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRAMEF9Q5VWM5 478 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRAMEF7Q5VXH5 474 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TIGD3Q6B0B8 471 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 LAIR2Q6ISS4 152 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF584Q8IVC4 421 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 BBS1Q8NFJ9 593 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2AJ1Q8NGZ0 328 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PEX11GQ96HA9 241 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MSLNLQ96KJ4 702 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 WDFY2Q96P53 400 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ZBP1Q9H171 429 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TESQ9UGI8 421 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MSRAQ9UJ68 235 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ICKQ9UPZ9 632 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ACOD1A6NK06 481 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MEN1O00255 615 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 LCMT2O60294 686 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC22A5O76082 557 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PDGFAP04085 211 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ITGA3P26006 1051 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CD6P30203 668 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CCKBRP32239 447 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PRSS3P35030 304 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 EPHA5P54756 1037 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CLDN12P56749 244 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CLDN20P56880 219 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SIRPAP78324 504 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 METRNLQ641Q3 311 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MFSD12Q6NUT3 480 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF620Q6ZNG0 422 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM99Q8N816 258 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 GPR32P1Q8NGA4 272 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 OR52R1Q8NGF1 315 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PTCHD1Q96NR3 888 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 LMF1Q96S06 567 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ORAI3Q9BRQ5 295 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PLA2G12AQ9BZM1 189 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CST11Q9H112 138 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 BCL2L10Q9HD36 194 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 HPF1Q9NWY4 346 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 B3GNT2Q9NY97 397 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TRABD2BA6NFA1 517 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 NPIPA5E9PKD4 350 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 F5H5P2 479 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 KLF8O95600 359 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 CTSLP07711 333 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ERVFC1P60507 584 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 GALEQ14376 348 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms