RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 FAM171A2A8MVW0 826 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 C9JQL5 133 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 SULT2B1O00204 365 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 PCDH8O95206 1070 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 GP1BAP07359 652 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 TYMPP19971 482 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 CCR7P32248 378 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 CEBPGP53567 150 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 RAE1P78406 368 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 CHAF1BQ13112 559 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 CSRP2Q16527 193 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 OCLNQ16625 522 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 POM121L1PQ3SYA9 428 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 MINDY4Q4G0A6 757 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 PYY3Q5JQD4 70 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 C12orf73Q69YU5 71 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 C6orf120Q7Z4R8 191 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 TMEM17Q86X19 198 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 PRSS58Q8IYP2 241 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 CPXM2Q8N436 756 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 KLHL36Q8N4N3 616 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 OR5W2Q8NH69 310 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 THEM6Q8WUY1 208 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 GTF3AQ92664 365 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 GHSRQ92847 366 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 ZDHHC12Q96GR4 267 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 LURAP1Q96LR2 239 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 TPSD1Q9BZJ3 242 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC32A1Q9H598 525 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 C11orf49Q9H6J7 331 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 POPDC3Q9HBV1 291 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 EQTNQ9NQ60 294 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 GKN1Q9NS71 199 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 PRR13Q9NZ81 148 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 RNF181Q9P0P0 153 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 SHPKQ9UHJ6 478 aa6.75□□□□□ -1.33
LIMCH1-207ENST00000508466 COL6A3P12111 3177 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 A0A1W2PRQ8 180 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 DAPL1A0PJW8 107 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 TMEM202A6NGA9 273 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 COLCA2A8K830 154 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 F5H5P2 479 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ATXN7O15265 892 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 HEXBP07686 556 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 AOAHP28039 575 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ABCD3P28288 659 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 FGF9P31371 208 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 LIMS1P48059 325 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 SOX2P48431 317 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ARF5P84085 180 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 FZD5Q13467 585 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 UBXN2BQ14CS0 331 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 TEAD2Q15562 447 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ALG11Q2TAA5 492 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF529Q6P280 563 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF322Q6U7Q0 402 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 TAF8Q7Z7C8 310 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 STX12Q86Y82 276 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 GJD3Q8N144 294 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 PLA2G15Q8NCC3 412 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 NEIL2Q969S2 332 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 MACROD1Q9BQ69 325 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ALG8Q9BVK2 526 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 BARX1Q9HBU1 254 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 SBF1O95248 1867 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 OR2AT4A6NND4 320 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 EEF1E1-BLOC1S5C9J1V9 151 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 KPNA3O00505 521 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 STK25O00506 426 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 RGS9O75916 674 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 OR8U8P0C7N1 319 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 COX5BP10606 129 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF8P17098 575 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 GABRR2P28476 465 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 PTGER3P43115 390 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 RFX3P48380 749 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 NDUFA6P56556 154 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 AP3S2P59780 193 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ACVR1Q04771 509 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF234Q14588 700 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 SURF2Q15527 256 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 TAF1CQ15572 869 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF750Q32MQ0 723 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 GLDNQ6ZMI3 551 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 BEND4Q6ZU67 534 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 GPC2Q8N158 579 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 FAM26EQ8N5C1 309 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 OR5T3Q8NGG3 340 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 AKR1E2Q96JD6 320 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 C4orf36Q96KX1 117 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 P2RY12Q9H244 342 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 CXorf36Q9H7Y0 433 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 IL26Q9NPH9 171 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 LHX9Q9NQ69 397 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 GPN3Q9UHW5 284 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF346Q9UL40 294 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 OARD1Q9Y530 152 aa6.74□□□□□ -1.33
LIMCH1-207ENST00000508466 URGCP-MRPS24S4R325 110 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms