RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PRKACBP22694 351 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 RGS4P49798 205 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 RPS6P62753 249 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 TGM3Q08188 693 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 CUL1Q13616 776 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 UBE2V2Q15819 145 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZNF79Q15937 498 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 TATDN3Q17R31 274 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 ISXQ2M1V0 245 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 EXOC3L2Q2M3D2 409 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 ADPRMQ3LIE5 342 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 CYBRD1Q53TN4 286 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 SPANXN2Q5MJ10 180 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 RABGAP1LQ5R372 815 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 LEG1Q6P5S2 330 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZNF562Q6V9R5 426 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 HACD2Q6Y1H2 254 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 Q7L0L9 218 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 BBS1Q8NFJ9 593 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 BPIFCQ8NFQ6 507 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 OR9K2Q8NGE7 335 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 RAB3IL1Q8TBN0 382 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 TRMT10AQ8TBZ6 339 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 NCLNQ969V3 563 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 ISG20Q96AZ6 181 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 C11orf70Q9BRQ4 267 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 RIOK1Q9BRS2 568 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 NUP58Q9BVL2 599 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 MRPL13Q9BYD1 178 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 KAT8Q9H7Z6 458 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 MEAF6Q9HAF1 191 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 CRLS1Q9UJA2 301 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 MOKQ9UQ07 419 aa3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 EXOSC1Q9Y3B2 195 aaKnown RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 V9GYY5 206 aaPredicted RBP3.54□□□□□ -1.84
HMGB1P38-201ENST00000490557 USP6P35125 1406 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 KANK1Q14678 1352 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 MBLAC1A4D2B0 266 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 ARHGEF35A5YM69 484 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CASKO14936 926 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 HDAC3O15379 428 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 ADAM12O43184 909 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 TRIM3O75382 744 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 NDUFA7O95182 113 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZCCHC18P0CG32 403 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 DUX4L4P0CJ87 422 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CCDC166P0CW27 439 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 IGHV1-2P23083 117 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 DPP4P27487 766 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CA8P35219 290 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 NAPAP54920 295 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 OSTNP61366 133 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 NCBP1Q09161 790 aaKnown RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CYP51A1Q16850 503 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 SCYL2Q6P3W7 929 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 BTNL3Q6UXE8 466 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CCDC36Q8IYA8 594 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 GPR65Q8IYL9 337 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 GPR137CQ8N3F9 429 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 COMMD1Q8N668 190 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 PNPT1Q8TCS8 783 aaKnown RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 GIPC3Q8TF64 312 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 PINX1Q96BK5 328 aaKnown RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 EFHD2Q96C19 240 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 VSIG2Q96IQ7 327 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 ZNF396Q96N95 335 aaPredicted RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CITED1Q99966 193 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 SYNDIG1Q9H7V2 258 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 POLD4Q9HCU8 107 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 APMAPQ9HDC9 416 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 AGPAT3Q9NRZ7 376 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 C1orf123Q9NWV4 160 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 ADAM22Q9P0K1 906 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 P2RX2Q9UBL9 471 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 APOBEC3BQ9UH17 382 aaKnown RBP3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 OR10H1Q9Y4A9 318 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 GMEB1Q9Y692 573 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 CROCCQ5TZA2 2017 aa3.53□□□□□ -1.84
HMGB1P38-201ENST00000490557 PARD3Q8TEW0 1356 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 MAP3K19Q56UN5 1328 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 IGLV8-61A0A075B6I0 122 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 HEATR9A2RTY3 570 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 HSBP1L1C9JCN9 74 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 E9PMD0 336 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 H0YL77 283 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 SGK494L7N484 410 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 PDXKO00764 312 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 IMPA2O14732 288 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 YKT6O15498 198 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 ANP32DO95626 131 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 LGI1O95970 557 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 IVLP07476 585 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 ANXA4P09525 319 aaPredicted RBP3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 PABPC4LP0CB38 370 aaKnown RBP3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 OR8G3PP0DMU2 310 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 PNMTP11086 282 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 ZNF44P15621 663 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 AZU1P20160 251 aa3.52□□□□□ -1.85
HMGB1P38-201ENST00000490557 UGT1A3P35503 534 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms