RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 VRK2Q86Y07 508 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 CCDC71Q8IV32 467 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-202ENST00000452372 PCYOX1LQ8NBM8 494 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 LILRB4Q8NHJ6 448 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 MBD3L2Q8NHZ7 208 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-202ENST00000452372 NFKBIDQ8NI38 313 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 BBS10Q8TAM1 723 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 ST8SIA1Q92185 356 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 KAT8Q9H7Z6 458 aaKnown RBP17.96■□□□□ 0.47
COL9A3-202ENST00000452372 NANOGQ9H9S0 305 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 DNAJB12Q9NXW2 375 aaKnown RBP17.96■□□□□ 0.47
COL9A3-202ENST00000452372 IFT52Q9Y366 437 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 HCFC1P51610 2035 aa17.96■□□□□ 0.47
COL9A3-202ENST00000452372 HIVEP1P15822 2718 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 HSPB2A8KAH6 182 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 H0YC42 278 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 SEC14L5O43304 696 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 EFNA2O43921 213 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 SLC6A2P23975 617 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 ELK4P28324 431 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 SLC6A8P48029 635 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 TPD52P55327 224 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-202ENST00000452372 LARS2Q15031 903 aaKnown RBP17.95■□□□□ 0.46
COL9A3-202ENST00000452372 HSPB2Q16082 182 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 LIN52Q52LA3 116 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 RNF220Q5VTB9 566 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 CHMP1BQ7LBR1 199 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 GDF7Q7Z4P5 450 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 GGNQ86UU5 652 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 TNIP2Q8NFZ5 429 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 CA5BP1Q8WTZ4 195 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 TMEM234Q8WY98 164 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 SMPDL3BQ92485 455 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 WNT2BQ93097 391 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 LURAP1Q96LR2 239 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 SH3GL1Q99961 368 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 MYLK2Q9H1R3 596 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 CLCF1Q9UBD9 225 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 ZNF443Q9Y2A4 671 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-202ENST00000452372 MED12LQ86YW9 2145 aa17.95■□□□□ 0.46
COL9A3-202ENST00000452372 CDHR4A6H8M9 788 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 FXYD1O00168 92 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ADAMDEC1O15204 470 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 IL2RAP01589 272 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 COX4I1P13073 169 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 IL11P20809 199 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ME2P23368 584 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 DLX5P56178 289 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 SESN3P58005 492 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 RPS3AP61247 264 aaKnown RBP17.94■□□□□ 0.46
COL9A3-202ENST00000452372 EEF1A1P68104 462 aaKnown RBP17.94■□□□□ 0.46
COL9A3-202ENST00000452372 RBBP4Q09028 425 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 SCARB2Q14108 478 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ZNF836Q6ZNA1 936 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 PTOV1Q86YD1 416 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 GRAMD2AQ8IUY3 354 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 LILRA2Q8N149 483 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 SLC39A3Q9BRY0 314 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 SPATA9Q9BWV2 254 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ENKD1Q9H0I2 346 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 CACYBPQ9HB71 228 aaKnown RBP17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ACER3Q9NUN7 267 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 RLIMQ9NVW2 624 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 GID8Q9NWU2 228 aa17.94■□□□□ 0.46
COL9A3-202ENST00000452372 ADAM11O75078 769 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 PABPC4LP0CB38 370 aaKnown RBP17.93■□□□□ 0.46
COL9A3-202ENST00000452372 RYKP34925 604 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 KRTAP10-9P60411 292 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 CYP51A1Q16850 503 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 CTU2Q2VPK5 515 aaKnown RBP17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ZNF311Q5JNZ3 666 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ESPNLQ6ZVH7 1005 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 NET1Q7Z628 596 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-202ENST00000452372 SERPINA11Q86U17 422 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 TREML1Q86YW5 311 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ZNF440Q8IYI8 595 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 POU5F2Q8N7G0 328 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 C9orf106Q8NAJ2 232 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 C11orf65Q8NCR3 313 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 NAXEQ8NCW5 288 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 HIPK4Q8NE63 616 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 OR8J3Q8NGG0 315 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 OR10A6Q8NH74 314 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ZNF563Q8TA94 476 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ADGRG7Q96K78 797 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 TM9SF2Q99805 663 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 SPOCK3Q9BQ16 436 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 ARMC7Q9H6L4 198 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 TMEM185BQ9H7F4 350 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 PRDM4Q9UKN5 801 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 CHST2Q9Y4C5 530 aa17.93■□□□□ 0.46
COL9A3-202ENST00000452372 CFAP73A6NFT4 308 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 FAAHO00519 579 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 EIF1AYO14602 144 aaKnown RBP17.92■□□□□ 0.46
COL9A3-202ENST00000452372 RCBTB2O95199 551 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 OPN1LWP04000 364 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 GZMMP51124 257 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 SELENBP1Q13228 472 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 PLXDC2Q6UX71 529 aa17.92■□□□□ 0.46
COL9A3-202ENST00000452372 PLEKHM3Q6ZWE6 761 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms