RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 STKLD1Q8NE28 680 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 OR4D10Q8NGI6 311 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SLC2A14Q8TDB8 520 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 C10orf82Q8WW14 230 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SLC5A11Q8WWX8 675 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 TM9SF4Q92544 642 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 NDRG1Q92597 394 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 NRCAMQ92823 1304 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 FBXO17Q96EF6 278 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 GIMAP5Q96F15 307 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 PCED1BQ96HM7 432 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SERAC1Q96JX3 654 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 CYTH2Q99418 400 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MED10Q9BTT4 135 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 NDUFAF3Q9BU61 184 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 PAPPA2Q9BXP8 1791 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 GFRA4Q9GZZ7 299 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 RAB33BQ9H082 229 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 NXF3Q9H4D5 531 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 ATP13A3Q9H7F0 1226 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 POPDC2Q9HBU9 364 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 COX16Q9P0S2 106 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MAD1L1Q9Y6D9 718 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 A0A0G2JND7 137 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SMIM28A0A1B0GU29 152 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 hCG_38984A0A1B0GV85 526 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 A0A1B0GVY2 172 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 GLTPD2A6NH11 291 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TRIM49D1C9J1S8 452 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 P2RY10O00398 339 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 CLDN5O00501 218 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 CYB561D2O14569 222 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 COPEO14579 308 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TRDMT1O14717 391 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 XPO1O14980 1071 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 ARPC1BO15143 372 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 MAGEB3O15480 346 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 UGT1A9O60656 530 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 HUS1O60921 280 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ATP5HO75947 161 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SEC24AO95486 1093 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 APOEP02649 317 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 AMBPP02760 352 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SNRPAP09012 282 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 MBL2P11226 248 aaPredicted RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 CCNB1P14635 433 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 PAX1P15863 534 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TPSB2P20231 275 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ATP6V1C1P21283 382 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 BGNP21810 368 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 DRD5P21918 477 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ANOS1P23352 680 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 GLRA1P23415 457 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 GIFP27352 417 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 DPP4P27487 766 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ADRA1AP35348 466 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 MATKP42679 507 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 NPY2RP49146 381 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SLC8A3P57103 927 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 CDKL1Q00532 357 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 BEX3Q00994 111 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 LRRC74AQ0VAA2 488 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ADIGQ0VDE8 80 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SRSF9Q13242 221 aaKnown RBP eCLIP3.56□□□□□ -1.84
VPS29-202ENST00000447578 RIPK1Q13546 671 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TPSAB1Q15661 275 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 DPYSL2Q16555 572 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 KIAA1644Q3SXP7 199 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SLC36A3Q495N2 470 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 WSCD1Q658N2 575 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 NCBP2-AS2Q69YL0 99 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 LRRC8BQ6P9F7 803 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ALKAL1Q6UXT8 129 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 C4orf22Q6V702 233 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 Q6ZVQ6 151 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 Q71RC1 249 aaPredicted RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 ASRGL1Q7L266 308 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SLC26A9Q7LBE3 791 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 STRADAQ7RTN6 431 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 SLC26A11Q86WA9 606 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 FAM131BQ86XD5 332 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 PYROXD2Q8N2H3 581 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 PARP8Q8N3A8 854 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ADAD2Q8NCV1 583 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 KLHDC9Q8NEP7 349 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 C8orf46Q8TAG6 207 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 AGAP11Q8TF27 550 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TFB1MQ8WVM0 346 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 HTR3CQ8WXA8 447 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 DYRK2Q92630 601 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 PINX1Q96BK5 328 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 HSFY1Q96LI6 401 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 LURAP1Q96LR2 239 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 QKIQ96PU8 341 aaKnown RBP eCLIP3.56□□□□□ -1.841e-6■■■■■ 30.1
VPS29-202ENST00000447578 CSPG4P5Q96PW8 444 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TSSK1BQ9BXA7 367 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 TDRD1Q9BXT4 1180 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 IQCGQ9H095 443 aaKnown RBP3.56□□□□□ -1.84
VPS29-202ENST00000447578 GORASP2Q9H8Y8 452 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 WDR76Q9H967 626 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms