RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TPST1O60507 370 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF354AO60765 605 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ICOSLGO75144 302 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 GLSO94925 669 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 NADKO95544 446 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 OXSR1O95747 527 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 IFNW1P05000 195 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 FABP3P05413 133 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 CYP4B1P13584 511 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 SOX3P41225 446 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 PNLIPRP2P54317 469 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ATP12AP54707 1039 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 DLX5P56178 289 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 PPIAP62937 165 aaKnown RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 SELENOWP63302 87 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 RPP38P78345 283 aaKnown RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 GRAMD1BQ3KR37 738 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 GXYLT1Q4G148 440 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 RTL6Q6ICC9 239 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 IL20RBQ6UXL0 311 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF836Q6ZNA1 936 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 VRK2Q86Y07 508 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 LIX1LQ8IVB5 337 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 DND1Q8IYX4 353 aaKnown RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 OR10Q1Q8NGQ4 319 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 SPACA9Q96E40 222 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF559Q9BR84 538 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 TMUB1Q9BVT8 246 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 TTTY12Q9BZ98 90 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 TBL1XR1Q9BZK7 514 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 S100A14Q9HCY8 104 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 UBQLN4Q9NRR5 601 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 FBXO34Q9NWN3 711 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 KCNN3Q9UGI6 736 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 ABCG2Q9UNQ0 655 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 AP4S1Q9Y587 144 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 FAM215AQ9Y5M1 114 aa11.04□□□□□ -0.64
PTPRF-208ENST00000437607 MED12Q93074 2177 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 CENPVL1A0A0U1RR11 272 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 TP53I11O14683 189 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 TSPAN2O60636 221 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 UGT2B11O75310 529 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 UGT2B17O75795 530 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 IGHG3P01860 377 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 MT-ND1P03886 318 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 FESP07332 822 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 FBXO45P0C2W1 286 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 GLI4P10075 376 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 NAGAP17050 411 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 KCNJ5P48544 419 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 CLK3P49761 638 aaKnown RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 IST1P53990 364 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 RGS8P57771 180 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF141Q15928 474 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 ZSWIM7Q19AV6 140 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 MRPL2Q5T653 305 aaKnown RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 TMEM200AQ86VY9 491 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 CARM1Q86X55 608 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 ZDHHC21Q8IVQ6 265 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 GPALPP1Q8IXQ4 340 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 CMIPQ8IY22 773 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 GPR32P1Q8NGA4 272 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 OR5M9Q8NGP3 310 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 OR5M3Q8NGP4 307 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 VANGL1Q8TAA9 524 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 TMCO6Q96DC7 493 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 DUS3LQ96G46 650 aaKnown RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 TTYH2Q9BSA4 534 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 DCLRE1BQ9H816 532 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 EVA1AQ9H8M9 152 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 RNPEPL1Q9HAU8 725 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 CCM2LQ9NUG4 571 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 ARMC1Q9NVT9 282 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 HPF1Q9NWY4 346 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 SLC35A3Q9Y2D2 325 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 NSD1Q96L73 2696 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-208ENST00000437607 MED12LQ86YW9 2145 aa11.03□□□□□ -0.64
PTPRF-208ENST00000437607 A0A0G2JNJ9 132 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 A0A1B0GVC2 190 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 PRAMEF25A6NGN4 478 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 SERINC4A6NH21 518 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 NPIPB9F8W1W9 429 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 M0R3H8 397 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 SCO2O43819 266 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 MGRN1O60291 552 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 TIPRLO75663 272 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 ATP6V1G2O95670 118 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 BAG2O95816 211 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 CSTAP01040 98 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 NGFRP08138 427 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 CELA3AP09093 270 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 UBL4AP11441 157 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 ITGA2P17301 1181 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 HOXB4P17483 251 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-208ENST00000437607 TNFRSF1BP20333 461 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 ACVR2AP27037 513 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 EVI2BP34910 448 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 ADH7P40394 386 aa11.02□□□□□ -0.65
PTPRF-208ENST00000437607 MAGEA5P43359 124 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms