RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HS6ST2Q96MM7 605 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 SDF2Q99470 211 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 MDFIQ99750 246 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 THUMPD3Q9BV44 507 aaKnown RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 ZDHHC2Q9UIJ5 367 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 LIPT1Q9Y234 373 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 ABCA1O95477 2261 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 SERINC4A6NH21 518 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 ZNF814B7Z6K7 855 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 NPIPB9F8W1W9 429 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 SMAD9O15198 467 aaKnown RBP12.86□□□□□ -0.35
SDC1-204ENST00000429035 EIF4E2O60573 245 aaKnown RBP12.86□□□□□ -0.35
SDC1-204ENST00000429035 CSTAP01040 98 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 IGHV3-9P01782 118 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 TP53P04637 393 aaPredicted RBP12.86□□□□□ -0.35
SDC1-204ENST00000429035 G6PDP11413 515 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 PRPS1L1P21108 318 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 ARRB2P32121 409 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 IDUAP35475 653 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 ACVR1BP36896 505 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 OR3A2P47893 321 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 RAC3P60763 192 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 P2RY6Q15077 328 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 PPA1Q15181 289 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 OR4F3Q6IEY1 312 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 HMGN2P46Q86SG4 172 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 ZNF563Q8TA94 476 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 PSMA8Q8TAA3 256 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 TRIM44Q96DX7 344 aaPredicted RBP12.86□□□□□ -0.35
SDC1-204ENST00000429035 PKNOX2Q96KN3 472 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 OR51I1Q9H343 314 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 SERHL2Q9H4I8 314 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 L2HGDHQ9H9P8 463 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 GP6Q9HCN6 339 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 SERINC1Q9NRX5 453 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 MKLN1Q9UL63 735 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 ZANQ9Y493 2812 aa12.86□□□□□ -0.35
SDC1-204ENST00000429035 DPRXA6NFQ7 191 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 CYTIPO60759 359 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 STX11O75558 287 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 RAD51DO75771 328 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 AK1P00568 194 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 PTNP21246 168 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 EDNRAP25101 427 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 SERPINB5P36952 375 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 SESN3P58005 492 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 C21orf58P58505 322 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 MAD2L1Q13257 205 aaPredicted RBP12.85□□□□□ -0.35
SDC1-204ENST00000429035 SKP2Q13309 424 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 TNFAIP8L2Q6P589 184 aaPredicted RBP12.85□□□□□ -0.35
SDC1-204ENST00000429035 Q6ZT83 130 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 C6orf120Q7Z4R8 191 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 ANKRD46Q86W74 232 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 UBE2J2Q8N2K1 259 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 PIAS4Q8N2W9 510 aaPredicted RBP12.85□□□□□ -0.35
SDC1-204ENST00000429035 PIWIL2Q8TC59 973 aaKnown RBP12.85□□□□□ -0.35
SDC1-204ENST00000429035 TMEM234Q8WY98 164 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 COQ8BQ96D53 544 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 MUCL1Q96DR8 90 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 NMUR2Q9GZQ4 415 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 LAT2Q9GZY6 243 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 BCO1Q9HAY6 547 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 EXD2Q9NVH0 621 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 NOP53Q9NZM5 478 aaKnown RBP12.85□□□□□ -0.35
SDC1-204ENST00000429035 POU2F3Q9UKI9 436 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 ADAM21Q9UKJ8 722 aa12.85□□□□□ -0.35
SDC1-204ENST00000429035 CIB4A0PJX0 185 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 WDR91A4D1P6 747 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 DUXAA6NLW8 204 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SULT2B1O00204 365 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ABCD4O14678 606 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 RAMP1O60894 148 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ADAM11O75078 769 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 NDUFS7O75251 213 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SOX30O94993 753 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 CPSF4O95639 269 aaKnown RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 DANCRP0C864 163 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 GGT1P19440 569 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 PGCP20142 388 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 IGHV1-2P23083 117 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 RYKP34925 604 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 DIO1P49895 249 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 CSNK2A1P68400 391 aaPredicted RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 HPCAP84074 193 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ETFDHQ16134 617 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SYT14P1Q58G82 188 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SLC25A53Q5H9E4 307 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ATAD3BQ5T9A4 648 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 GALNT5Q7Z7M9 940 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ST8SIA1Q92185 356 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 ZHX1-C8orf76Q96EF9 292 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 REPIN1Q9BWE0 567 aaKnown RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 REG4Q9BYZ8 158 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 SLCO5A1Q9H2Y9 848 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 HEATR1Q9H583 2144 aaKnown RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 CISD1Q9NZ45 108 aaKnown RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 EMC3Q9P0I2 261 aa12.84□□□□□ -0.35
SDC1-204ENST00000429035 GDF2Q9UK05 429 aaPredicted RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 ING1Q9UK53 422 aaPredicted RBP12.84□□□□□ -0.35
SDC1-204ENST00000429035 PCDHGB4Q9UN71 923 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms