RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 C12orf10Q9HB07 376 aa9.19□□□□□ -0.94
CD44-207ENST00000425428 AGPAT4Q9NRZ5 378 aa9.19□□□□□ -0.94
CD44-207ENST00000425428 ACER3Q9NUN7 267 aa9.19□□□□□ -0.94
CD44-207ENST00000425428 MED17Q9NVC6 651 aa9.19□□□□□ -0.94
CD44-207ENST00000425428 RIMS3Q9UJD0 308 aa9.19□□□□□ -0.94
CD44-207ENST00000425428 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 FAM166BA8MTA8 275 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 TNFRSF11BO00300 401 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 CLOCKO15516 846 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 CHP2O43745 196 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 ZNF17P17021 662 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 GTF2E2P29084 291 aaKnown RBP9.18□□□□□ -0.94
CD44-207ENST00000425428 CRYBA2P53672 197 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 SESN3P58005 492 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 NPTX1Q15818 432 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 LINC00303Q3SY05 128 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 DCST1Q5T197 706 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 POMZP3Q6PJE2 187 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 CHMP1BQ7LBR1 199 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 ZNF227Q86WZ6 799 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 WDSUB1Q8N9V3 476 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 PAPD5Q8NDF8 572 aaKnown RBP9.18□□□□□ -0.94
CD44-207ENST00000425428 SLC25A43Q8WUT9 341 aaPredicted RBP9.18□□□□□ -0.94
CD44-207ENST00000425428 SFXN2Q96NB2 322 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 HES7Q9BYE0 225 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 VCXQ9H320 206 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 NDUFAF4Q9P032 175 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 SAMHD1Q9Y3Z3 626 aaKnown RBP9.18□□□□□ -0.94
CD44-207ENST00000425428 TESMINQ9Y4I5 508 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 PCNX3Q9H6A9 2034 aa9.18□□□□□ -0.94
CD44-207ENST00000425428 HTR3EA5X5Y0 456 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TIPRLO75663 272 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TFPIP10646 304 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ELK4P28324 431 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TACR3P29371 465 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ACAA2P42765 397 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 MAGEA2P43356 314 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 CDH12P55289 794 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 VLDLRP98155 873 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 HOXC5Q00444 222 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 FOXD4Q12950 439 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 PIN1Q13526 163 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 HYAL4Q2M3T9 481 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 SLC6A19Q695T7 634 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 C3orf33Q6P1S2 294 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ZNF730Q6ZMV8 503 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 OFCC1Q8IZS5 231 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 FAM86B1Q8N7N1 296 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RBMXL3Q8N7X1 1067 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 NDEL1Q9GZM8 345 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 VCX3BQ9H321 246 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ZNF556Q9HAH1 456 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TIGARQ9NQ88 270 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 CTPS2Q9NRF8 586 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 DEPPQ9NTK1 212 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 C6orf203Q9P0P8 240 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 KIF17Q9P2E2 1029 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 FBXL2Q9UKC9 423 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 SLC7A7Q9UM01 511 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RPH3AQ9Y2J0 694 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 ORC6Q9Y5N6 252 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TMED7-TICAM2A0A0A6YYA0 188 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 A0A1B0GWA3 101 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 H0Y3Z8 333 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TPST2O60704 377 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 MT-ND1P03886 318 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 PRG2P13727 222 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 PRKCAP17252 672 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TCEA1P23193 301 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 DNAJA1P31689 397 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 RFC3P40938 356 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RBM34P42696 430 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 CLK1P49759 484 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 ZNF136P52737 540 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 NUP107P57740 925 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 SELENBP1Q13228 472 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RCN1Q15293 331 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 SF3B4Q15427 424 aaKnown RBP eCLIP9.17□□□□□ -0.94
CD44-207ENST00000425428 PLPPR5Q32ZL2 321 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 PLEKHN1Q494U1 663 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 KRTCAP3Q53RY4 240 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ARSKQ6UWY0 536 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RBM45Q8IUH3 476 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 ZDHHC13Q8IUH4 622 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RNF113BQ8IZP6 322 aaKnown RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 SVOPLQ8N434 492 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TMEM251Q8N6I4 163 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 C10orf53Q8N6V4 93 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 FAM83FQ8NEG4 500 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 CENPNQ96H22 339 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 C7orf34Q96L11 122 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 UBL7Q96S82 380 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 TAPBPLQ9BX59 468 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 RTN4RQ9BZR6 473 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ZNF703Q9H7S9 590 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 NMNAT1Q9HAN9 279 aaPredicted RBP9.17□□□□□ -0.94
CD44-207ENST00000425428 PROK2Q9HC23 129 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 CHRNA9Q9UGM1 479 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 TMED7Q9Y3B3 224 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 MED31Q9Y3C7 131 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms