RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZNF69Q9UC07 566 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 B3GALT2O43825 422 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 MPC2O95563 127 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 THBS1P07996 1170 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 S100A11P31949 105 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 CSF2RBP32927 897 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 RPS15AP62244 130 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 MAD2L1BPQ15013 274 aaPredicted RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 SMN1Q16637 294 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 DUOXA1Q1HG43 343 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 VMACQ2NL98 169 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 BAIAP2L2Q6UXY1 529 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 OR2T12Q8NG77 320 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 PPCDCQ96CD2 204 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 KCTD7Q96MP8 289 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 C2orf88Q9BSF0 95 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 BOCQ9BWV1 1114 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 FZD3Q9NPG1 666 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 CTPS2Q9NRF8 586 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 TMEM45AQ9NWC5 275 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 GTF2A1LQ9UNN4 478 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 F3P13726 295 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 GALNSP34059 522 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 PROX2Q3B8N5 592 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 RNASE12Q5GAN4 147 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 TMEM164Q5U3C3 297 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 HLA-DQA1Q5Y7H0 255 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 FBXO42Q6P3S6 717 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 CPEB3Q8NE35 698 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 UPRTQ96BW1 309 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 RRNAD1Q96FB5 475 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 CPNE2Q96FN4 548 aaPredicted RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 RPP25Q9BUL9 199 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 SLC25A32Q9H2D1 315 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 PIGMQ9H3S5 423 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 TAC3Q9UHF0 121 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 TP53TG5Q9Y2B4 290 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 TMEM200CA6NKL6 621 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 LINC00032P0C843 101 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 C1GALT1C1LP0DN25 315 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 UGT2B7P16662 529 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 SERTAD2Q14140 314 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 GTDC1Q4AE62 458 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 RFTN2Q52LD8 501 aaPredicted RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 CNIH2Q6PI25 160 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 TMIGD1Q6UXZ0 262 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 FBXO17Q96EF6 278 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 FAM120BQ96EK7 910 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 LINC00615Q96LM1 132 aaPredicted RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 SOX7Q9BT81 388 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 DUSP26Q9BV47 211 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 MRPL37Q9BZE1 423 aaKnown RBP9.15□□□□□ -0.94
USP54-205ENST00000424265 SLC6A20Q9NP91 592 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 VPS29Q9UBQ0 182 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 BTRCQ9Y297 605 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 V9GYH0 126 aa9.15□□□□□ -0.94
USP54-205ENST00000424265 A0A1W2PPC4 97 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 TLR4O00206 839 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 ENGP17813 658 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 GABRG2P18507 467 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 HTR1EP28566 365 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 ADH7P40394 386 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 STARD6P59095 220 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 CDC42P60953 191 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 TMEM35AQ53FP2 167 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 NKAPLQ5M9Q1 402 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 C1orf185Q5T7R7 199 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 ISCA2Q86U28 154 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 TOMM5Q8N4H5 51 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 C1orf52Q8N6N3 182 aaKnown RBP9.15□□□□□ -0.95
USP54-205ENST00000424265 NANOGP1Q8N7R0 232 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 C16orf78Q8WTQ4 265 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 TSACCQ96A04 125 aaPredicted RBP9.15□□□□□ -0.95
USP54-205ENST00000424265 MRPS24Q96EL2 167 aaKnown RBP9.15□□□□□ -0.95
USP54-205ENST00000424265 P2RY12Q9H244 342 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 ENAMQ9NRM1 1142 aa9.15□□□□□ -0.95
USP54-205ENST00000424265 SIGLEC5O15389 551 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 CTSLP07711 333 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 KIR2DL1P43626 348 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 RNF144AP50876 292 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 NUTF2P61970 127 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 CTSL3PQ5NE16 218 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 AKR1C8PQ5T2L2 129 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TMEM145Q8NBT3 493 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 FBXO15Q8NCQ5 510 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 UBTD2Q8WUN7 234 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 FUBP1Q96AE4 644 aaKnown RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 RHBDF1Q96CC6 855 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 C1GALT1C1Q96EU7 318 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 NTMT1Q9BV86 223 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 WSB2Q9NYS7 404 aaPredicted RBP9.14□□□□□ -0.95
USP54-205ENST00000424265 MMACHCQ9Y4U1 282 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 TRAPPC13A5PLN9 417 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 K7EQS6 105 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 AP4M1O00189 453 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 MANBAO00462 879 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 GJB3O75712 270 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 IFNGR1P15260 489 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 MNDAP41218 407 aa9.14□□□□□ -0.95
USP54-205ENST00000424265 HHEXQ03014 270 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms