RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MTERF1Q99551 399 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 LPAR4Q99677 370 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 BARD1Q99728 777 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM204Q9BSN7 226 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 WDR41Q9HAD4 459 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 MID1IP1Q9NPA3 183 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PRTFDC1Q9NRG1 225 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PCDHB16Q9NRJ7 776 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 HIF1ANQ9NWT6 349 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 LYARQ9NX58 379 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PHF11Q9UIL8 331 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ANAPC2Q9UJX6 822 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 WBP11Q9Y2W2 641 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 HEATR5BQ9P2D3 2071 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 A0A0A6YYD5 115 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 A0A0G2JN53 185 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 GOLGA6L10A6NI86 522 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 A6NL46 340 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 C4orf51C9J302 202 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SLC28A1O00337 649 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 RTCAO00442 366 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TM9SF1O15321 606 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 BIRC5O15392 142 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SPAG7O75391 227 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PDYNP01213 254 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 BPGMP07738 259 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 HOXB5P09067 269 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TFPIP10646 304 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 COX6A1P12074 109 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TSPAN8P19075 237 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ITGA3P26006 1051 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PPP2R1BP30154 601 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ALDH3A1P30838 453 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TTKP33981 857 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 RYKP34925 604 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SERPINB5P36952 375 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PIGAP37287 484 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SLC18A1P54219 525 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TRA2BP62995 288 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 BTG2P78543 158 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 IGLV3-21P80748 117 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 EEF1A2Q05639 463 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 KLRB1Q12918 225 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 FOXD4Q12950 439 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 CSTF3Q12996 717 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 CHAF1BQ13112 559 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SERTAD2Q14140 314 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 CASP8Q14790 479 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ABRAXAS2Q15018 415 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 RNPS1Q15287 305 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 EXT1Q16394 746 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 GSTA3Q16772 222 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SFT2D3Q587I9 215 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SGO1Q5FBB7 561 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 AGAP7PQ5VUJ5 663 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 FAM205BPQ63HN1 556 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 H3F3CQ6NXT2 135 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PAPD4Q6PIY7 484 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 IGFL3Q6UXB1 125 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ISLR2Q6UXK2 745 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ASB18Q6ZVZ8 466 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 RPS27LQ71UM5 84 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 GPR180Q86V85 440 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 NUDT13Q86X67 352 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 NUDCD3Q8IVD9 361 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 C10orf107Q8IVU9 208 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 CLYBLQ8N0X4 340 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 AGAP11Q8TF27 550 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TMED6Q8WW62 240 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TM9SF4Q92544 642 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TANKQ92844 425 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 C8orf44Q96CB5 159 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PERPQ96FX8 193 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 METTL2AQ96IZ6 378 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 THOC3Q96J01 351 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 AGAP4Q96P64 663 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 FAM111AQ96PZ2 611 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 MAPKAP1Q9BPZ7 522 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PELOQ9BRX2 385 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 TMBIM4Q9HC24 238 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 EML4Q9HC35 981 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF160Q9HCG1 818 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 RRAGDQ9NQL2 400 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PFDN4Q9NQP4 134 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ARGLU1Q9NWB6 273 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 GPR83Q9NYM4 423 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 SLC17A7Q9P2U7 560 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 VPS29Q9UBQ0 182 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF225Q9UK10 706 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF580Q9UK33 172 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 A4GNTQ9UNA3 340 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PROCRQ9UNN8 238 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 PPIEQ9UNP9 301 aaKnown RBP2.28□□□□□ -2.04
VPS13A-208ENST00000423463 ASB4Q9Y574 426 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 LAMA1P25391 3075 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 EPG5Q9HCE0 2579 aa2.28□□□□□ -2.04
VPS13A-208ENST00000423463 AKAP13Q12802 2813 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ANKRD12Q6UB98 2062 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 SAP18O00422 153 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 PLPP1O14494 284 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms