RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SEC14L5O43304 696 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 F10P00742 488 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF28P17035 718 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 PLEKHS1Q5SXH7 462 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 RELL2Q8NC24 303 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM104Q8NE00 496 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 AMDHD1Q96NU7 426 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 OR51B6Q9H340 312 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 OLAHQ9NV23 265 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 YIPF1Q9Y548 306 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TNFRSF10AO00220 468 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SELPP16109 830 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 PCBD1P61457 104 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 OR5B2Q96R09 309 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 VAMP8Q9BV40 100 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 OR1A2Q9Y585 309 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 ZFC3H1O60293 1989 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM82A0PJX8 343 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 DUX1O43812 170 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 RNH1P13489 461 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 KIAA0141Q14154 515 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TAC4Q86UU9 113 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 FAM71F1Q96KD3 344 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 STXBP5LQ9Y2K9 1186 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SLX4Q8IY92 1834 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 VARS2Q5ST30 1063 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SEC22CQ9BRL7 303 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 NKX6-2Q9C056 277 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 FTSJ1Q9UET6 329 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM72A0PK05 275 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 DBHP09172 617 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC11A1P49279 550 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 INHBEP58166 350 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 ALKAL2Q6UX46 152 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SYT13Q7L8C5 426 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 CDCA5Q96FF9 252 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TECTBQ96PL2 329 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 NXF5Q9H1B4 397 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC25A18Q9H1K4 315 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 G3V3Q6 166 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 B4GALT5O43286 388 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SEC61A1P61619 476 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 LCN6P62502 163 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 CEBPEQ15744 281 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 TBCEQ15813 527 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 FAM122BQ7Z309 247 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 OR13C4Q8NGS5 318 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 RANGRFQ9HD47 186 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 SPHK1Q9NYA1 384 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 ENPP5Q9UJA9 477 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 WIF1Q9Y5W5 379 aa12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 MDC1Q14676 2089 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-204ENST00000413716 DLX3O60479 287 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ADAM11O75078 769 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 CXADRP78310 365 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC9A3R2Q15599 337 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 CDS1Q92903 461 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 RAB18Q9NP72 206 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 OBP2BQ9NPH6 170 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 SCN1AP35498 2009 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 RTTNQ86VV8 2226 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 PPP1R3DO95685 299 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 IL22RA1Q8N6P7 574 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 OR5B3Q8NH48 314 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 AKR1E2Q96JD6 320 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 KREMEN1Q96MU8 473 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 DTLQ9NZJ0 730 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 OARD1Q9Y530 152 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ANKRD66B4E2M5 251 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 POP7O75817 140 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 LIPCP11150 499 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 HTR1EP28566 365 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ELOCQ15369 112 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC35D2Q76EJ3 337 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 MINDY1Q8N5J2 469 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 SIMC1Q8NDZ2 872 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 DBF4BQ8NFT6 615 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 FOXJ1Q92949 421 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ANKRD19PQ9H560 264 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 TIA1P31483 386 aaKnown RBP eCLIP12.57□□□□□ -0.41e-7■■■■□ 25.2
CCDC88A-204ENST00000413716 PCLAFQ15004 111 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 EIF4HQ15056 248 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 LPCAT3Q6P1A2 487 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 VSIG10LQ86VR7 867 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 METTL17Q9H7H0 456 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 GOLGA2P5Q9HBQ8 144 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 MED16Q9Y2X0 877 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 TTC24A2A3L6 582 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 NUDT21O43809 227 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ADGRF3Q8IZF5 1079 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 C1orf226A1L170 272 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 OR2J3O76001 311 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 PTGIRP43119 386 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 CTXN1P60606 82 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 PRICKLE2Q7Z3G6 844 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 DIO2Q92813 273 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 EXOSC3Q9NQT5 275 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 GALPQ9UBC7 116 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 CASP3P42574 277 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms