RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 A0A1B0GUH1 482 aa12.15□□□□□ -0.47
COL6A3-206ENST00000409809 TRHRP34981 398 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-206ENST00000409809 GJA5P36382 358 aa12.15□□□□□ -0.47
COL6A3-206ENST00000409809 NAA10P41227 235 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-206ENST00000409809 MRPS34P82930 218 aaKnown RBP12.15□□□□□ -0.47
COL6A3-206ENST00000409809 CHRNEQ04844 493 aa12.15□□□□□ -0.47
COL6A3-206ENST00000409809 GLYR1Q49A26 553 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-206ENST00000409809 PCYT2Q99447 389 aa12.15□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF331Q9NQX6 463 aaPredicted RBP12.15□□□□□ -0.47
COL6A3-206ENST00000409809 COL14A1Q05707 1796 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 MYOCOSA0A1B0GUC4 107 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 H7BYZ3 331 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SOX1O00570 391 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 KDELR3O43731 214 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 IL1RNP18510 177 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 ODF4Q2M2E3 257 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 WDR5BQ86VZ2 330 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 DNAJC5GQ8N7S2 189 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 MRPL22Q9NWU5 206 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 BACE2Q9Y5Z0 518 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SAP18O00422 153 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 APBB3O95704 486 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SERPINA5P05154 406 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 ADORA3P0DMS8 318 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 OR12D1P0DN82 309 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF92Q03936 586 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 LRRC32Q14392 662 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 PLBD1Q6P4A8 553 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 OLAHQ9NV23 265 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 NUMBLQ9Y6R0 609 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 FUCA1P04066 466 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 PTRH1Q86Y79 214 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 MLLT10P55197 1068 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 UBE2G2P60604 165 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 RPS15AP62244 130 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 NKPD1Q17RQ9 610 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 NXPE4Q6UWF7 544 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 LAX1Q8IWV1 398 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SUMF1Q8NBK3 374 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 KCNA7Q96RP8 456 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SDK1Q7Z5N4 2213 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 BET1O15155 118 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 NUDT21O43809 227 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 ITGB5P18084 799 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 RPL17P18621 184 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 VIPR1P32241 457 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SF3B4Q15427 424 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 TTLL10Q6ZVT0 673 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 CDH26Q8IXH8 852 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 DNAJC15Q9Y5T4 150 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 A0A1B0GV50 99 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 M0R3H8 397 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 CR2P20023 1033 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 TRA2BP62995 288 aaKnown RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 TPRG1Q6ZUI0 275 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SERINC5Q86VE9 423 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 INTS14Q96SY0 518 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 VEGFDO43915 354 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 GDNFP39905 211 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 ADIRFQ15847 76 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SGCBQ16585 318 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 NUP43Q8NFH3 380 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 DDIT4LQ96D03 193 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 C11orf54Q9H0W9 315 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-206ENST00000409809 RCE1Q9Y256 329 aa12.14□□□□□ -0.47
COL6A3-206ENST00000409809 SSTR4P31391 388 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 SHMT2P34897 504 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 BEX3Q00994 111 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 FBXO48Q5FWF7 155 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CST9LP1Q5W188 147 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CERS5Q8N5B7 392 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 KRTCAP2Q8N6L1 136 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CPT1CQ8TCG5 803 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 PCDHGC4Q9Y5F7 938 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 VSTM2BA6NLU5 285 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 PCCBP05166 539 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 MS4A13Q5J8X5 152 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 NETO2Q8NC67 525 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 NANOS1Q8WY41 292 aaKnown RBP12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CABLES2Q9BTV7 478 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 SEMA6CQ9H3T2 930 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CST2P09228 141 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 RPE65Q16518 533 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 TP53BP1Q12888 1972 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-206ENST00000409809 AQP8O94778 261 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 ATP1B1P05026 303 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 TGM1P22735 817 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 UNC50Q53HI1 259 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 NHSL2Q5HYW2 709 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 SFXN4Q6P4A7 337 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 CLEC9AQ6UXN8 241 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 BPIFB2Q8N4F0 458 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 LSMEM1Q8N8F7 131 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 OR4D10Q8NGI6 311 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 MVB12BQ9H7P6 319 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 ACSS1Q9NUB1 689 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-206ENST00000409809 PSORS1C1Q9UIG5 152 aa12.13□□□□□ -0.47
COL6A3-206ENST00000409809 DOCK9Q9BZ29 2069 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms