RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FRG2CA6NGY1 282 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 SLC22A1O15245 554 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 ITGA10O75578 1167 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 CEACAM4O75871 244 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 SOX30O94993 753 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 NKX2-2O95096 273 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 FADS2O95864 444 aaKnown RBP12.31□□□□□ -0.44
LIMS1-204ENST00000409441 ITGB2P05107 769 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 CHMP24386 653 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 ALDH6A1Q02252 535 aaKnown RBP12.31□□□□□ -0.44
LIMS1-204ENST00000409441 COX10Q12887 443 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 ABHD17BQ5VST6 288 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 C9orf43Q8TAL5 461 aaPredicted RBP12.31□□□□□ -0.44
LIMS1-204ENST00000409441 PIK3R3Q92569 461 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 EXTL1Q92935 676 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 HSPBAP1Q96EW2 488 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 STACQ99469 402 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF552Q9H707 407 aaPredicted RBP12.31□□□□□ -0.44
LIMS1-204ENST00000409441 Q9N2J8 555 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 DUSP22Q9NRW4 184 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 CNOT2Q9NZN8 540 aaKnown RBP12.31□□□□□ -0.44
LIMS1-204ENST00000409441 OR10H1Q9Y4A9 318 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 KCNE3Q9Y6H6 103 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 MED13Q9UHV7 2174 aa12.31□□□□□ -0.44
LIMS1-204ENST00000409441 GXYLT2A0PJZ3 443 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 TO15178 435 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 OR10H3O60404 316 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF354AO60765 605 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-204ENST00000409441 SEMA7AO75326 666 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 BCAS1O75363 584 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-204ENST00000409441 ALPPP05187 535 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 NRG3P56975 720 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CTF1Q16619 201 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 MOGQ16653 247 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 SLX4IPQ5VYV7 408 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 HEPHL1Q6MZM0 1159 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 PGBD2Q6P3X8 592 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 C19orf48Q6RUI8 117 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CD300LDQ6UXZ3 194 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 LINC00696Q6ZRV3 163 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 LINC00299Q6ZSB3 139 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 P2RY8Q86VZ1 359 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 LACC1Q8IV20 430 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CCDC103Q8IW40 242 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 SLC15A4Q8N697 577 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 GGHQ92820 318 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CDS1Q92903 461 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 LMF1Q96S06 567 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 RASL10BQ96S79 203 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 ARHGDIGQ99819 225 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 FNDC11Q9BVV2 318 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 SLC38A1Q9H2H9 487 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 PRORYQ9H606 182 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CLN6Q9NWW5 311 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 REV1Q9UBZ9 1251 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 CBLCQ9ULV8 474 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 PTPRQQ9UMZ3 2332 aa12.3□□□□□ -0.44
LIMS1-204ENST00000409441 EFCAB10A6NFE3 127 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 CLDN24A6NM45 220 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 M0R3H8 397 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 NADKO95544 446 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 EPPINO95925 133 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 POU2F1P14859 743 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF182P17025 639 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PSMB9P28065 219 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PRKAR1BP31321 381 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 GSSP48637 474 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SNRPGP62308 76 aaKnown RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SEC23BQ15437 767 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 C16orf62Q7Z3J2 963 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 RBM45Q8IUH3 476 aaKnown RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PRR22Q8IZ63 422 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 BEST3Q8N1M1 668 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 COX18Q8N8Q8 333 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SLC22A8Q8TCC7 542 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 TRUB1Q8WWH5 349 aaKnown RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 Q96MT0 163 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 RHNO1Q9BSD3 238 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 ANKRD19PQ9H560 264 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SLC13A4Q9UKG4 626 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 NPFFR2Q9Y5X5 522 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 REM1O75628 298 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 CLPXO76031 633 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 KCNK2O95069 426 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PIPP12273 146 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 FUT4P22083 530 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 ABCD3P28288 659 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 IFNA8P32881 189 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 TRHRP34981 398 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SSR4P51571 173 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PSPHP78330 225 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 POU6F2P78424 691 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 AQP6Q13520 282 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF311Q5JNZ3 666 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 TMEM201Q5SNT2 666 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 AP1ARQ63HQ0 302 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 C12orf73Q69YU5 71 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 OPN5Q6U736 354 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 PTCHD4Q6ZW05 846 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 STX19Q8N4C7 294 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms