RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 IGSF8Q969P0 613 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SFXN2Q96NB2 322 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 NXF5Q9H1B4 397 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 NFKBIEO00221 500 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 RNASET2O00584 256 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 CPN1P15169 458 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF44P15621 663 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF26P17031 533 aaPredicted RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 HOXC8P31273 242 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 RPP30P78346 268 aaKnown RBP11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM35AQ53FP2 167 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SFRP5Q5T4F7 317 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 TMPPEQ6ZT21 453 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 SLC46A3Q7Z3Q1 461 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF75AQ96N20 296 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 DPH7Q9BTV6 452 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 PIGMQ9H3S5 423 aa11.14□□□□□ -0.63
SYNPO-202ENST00000394243 RIMS1Q86UR5 1692 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 CDHR4A6H8M9 788 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 VSTM5A8MXK1 200 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF780AO75290 641 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 GABARAPO95166 117 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 OR2C1O95371 312 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 G0S2P27469 103 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ERVK-16P61578 105 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 GRM7Q14831 915 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 NPWQ8N729 165 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 KCTD12Q96CX2 325 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 PAPOLGQ9BWT3 736 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 BOCQ9BWV1 1114 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 XYLT2Q9H1B5 865 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 CPED1A4D0V7 1026 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ARNTLO00327 626 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 HBE1P02100 147 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SDC1P18827 310 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF74Q16587 644 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SLC5A12Q1EHB4 618 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 HIST2H3AQ71DI3 136 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 CBLL1Q75N03 491 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 OTOP2Q7RTS6 562 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ADGRF3Q8IZF5 1079 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 OR5D14Q8NGL3 314 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 IFT22Q9H7X7 185 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 OR1A2Q9Y585 309 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 CHD1O14646 1710 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 MTMR11A4FU01 709 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 GPR137BO60478 399 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 LILRB3O75022 631 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 GIPRP48546 466 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SP3Q02447 781 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 UPP1Q16831 310 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 UNC5DQ6UXZ4 953 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 CLDN22Q8N7P3 220 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 DAZAP1Q96EP5 407 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 PRRC1Q96M27 445 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SEC22CQ9BRL7 303 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 C20orf27Q9GZN8 174 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 DUSP11O75319 330 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ELNP15502 786 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 FUT1P19526 365 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF252P-AS1Q0IIN9 211 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 LGALS14Q8TCE9 139 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 DHRS9Q9BPW9 319 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 C1QTNF2Q9BXJ5 285 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 POLMQ9NP87 494 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 VSTM2BA6NLU5 285 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 LEFTY1O75610 366 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SLC10A3P09131 477 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 ALDOCP09972 364 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 PIM1P11309 404 aaPredicted RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SERPINA2P20848 420 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 OXA1LQ15070 435 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 PHF19Q5T6S3 580 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 HBMQ6B0K9 141 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 KDELC1Q6UW63 502 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 FJX1Q86VR8 437 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 HAVCR2Q8TDQ0 301 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 FN3KRPQ9HA64 309 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 GMPR2Q9P2T1 348 aaKnown RBP11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SERTAD3Q9UJW9 196 aa11.13□□□□□ -0.63
SYNPO-202ENST00000394243 SHC1P29353 583 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SIM1P81133 766 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 RPE65Q16518 533 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 CD276Q5ZPR3 534 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SBSNQ6UWP8 590 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ANKRD53Q8N9V6 530 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 RTP4Q96DX8 246 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 CTRCQ99895 268 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 EGLN3Q9H6Z9 239 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 INPP5EQ9NRR6 644 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 HIDE1A8MVS5 230 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ACTL6BO94805 426 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 HOXC5Q00444 222 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 HEPHL1Q6MZM0 1159 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF322Q6U7Q0 402 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 KLHDC8AQ8IYD2 350 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 FAM185AQ8N0U4 392 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ASH2LQ9UBL3 628 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 TRAV27A0A087WT01 109 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 D6RAR5 112 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms