RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TRBV11-1A0A0K0K1C0 115 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 M0R082 166 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 GTPBP1O00178 669 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 GDF9O60383 454 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 MAN1A2O60476 641 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 NAGAP17050 411 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 OPRL1P41146 370 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 TMED10P49755 219 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 MLLT10P55197 1068 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 FOXD4Q12950 439 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 SEC23BQ15437 767 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 OCLNQ16625 522 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 HES3Q5TGS1 186 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 PLAG1Q6DJT9 500 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 CASP12Q6UXS9 341 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 ESX1Q8N693 406 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 ZSCAN1Q8NBB4 408 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 OR6Q1Q8NGQ2 317 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 NDNFQ8TB73 568 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 CNOT9Q92600 299 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 OMA1Q96E52 524 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 CCNL2Q96S94 520 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 ADOQ96SZ5 270 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 MMP27Q9H306 513 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC25A19Q9HC21 320 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 GPR83Q9NYM4 423 aa16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 RPL36Q9Y3U8 105 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-203ENST00000389856 A0A1W2PQD3 144 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 OR6C70A6NIJ9 312 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 TSPAN2O60636 221 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 DLGAP3O95886 979 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 STSP08842 583 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 GKN3PP0CG01 181 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 ADORA3P0DMS8 318 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 UBL4AP11441 157 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 POU2F1P14859 743 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 ABCD3P28288 659 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 C21orf33P30042 268 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 ETV5P41161 510 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC6A8P48029 635 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 GSSP48637 474 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 VBP1P61758 197 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 RGS21Q2M5E4 152 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 TUBA3EQ6PEY2 450 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 DHRS13Q6UX07 377 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 MBOAT2Q6ZWT7 520 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 CDK20Q8IZL9 346 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 CACTIN-AS1Q8N1I8 211 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 TMCO5AQ8N6Q1 288 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 LSMEM1Q8N8F7 131 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 APCDD1LQ8NCL9 501 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 OR4C3Q8NH37 302 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC22A8Q8TCC7 542 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 PMEPA1Q969W9 287 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 WDR77Q9BQA1 342 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF700Q9H0M5 742 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC7A7Q9UM01 511 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 TMEM5Q9Y2B1 443 aa16.71■□□□□ 0.27
CCDC88C-203ENST00000389856 A0A087WUU8 490 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 KPNA4O00629 521 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 SULT1C4O75897 302 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 NR4A1P22736 598 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 LIPAP38571 399 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 RBM34P42696 430 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 RPS15P62841 145 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 HOXC5Q00444 222 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 FAM199XQ6PEV8 388 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 MISPQ8IVT2 679 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 AMER2Q8N7J2 671 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 DNAJA4Q8WW22 397 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 NACC2Q96BF6 587 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 TEX12Q9BXU0 123 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 DEFB126Q9BYW3 111 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 TBL1XR1Q9BZK7 514 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 DCSTAMPQ9H295 470 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 TOR4AQ9NXH8 423 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 CCDC59Q9P031 241 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 IRGMA1A4Y4 181 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 ZNF264O43296 627 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 CHP2O43745 196 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 PPM1BO75688 479 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 LIMK1P53667 647 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 NCS1P62166 190 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 ULK3Q6PHR2 472 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 C19orf48Q6RUI8 117 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 DCDC5Q6ZRR9 648 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 IGFN1Q86VF2 1251 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 RNF217Q8TC41 542 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 PHOSPHO1Q8TCT1 267 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 TMCO6Q96DC7 493 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 POLDIP3Q9BY77 421 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 PRRG3Q9BZD7 231 aa16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 SLIRPQ9GZT3 109 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC88C-203ENST00000389856 HTR3EA5X5Y0 456 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 H3BN98 237 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 EIF4E2O60573 245 aaKnown RBP16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 KLF7O75840 302 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 PRG2P13727 222 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 TGM1P22735 817 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms