RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MRPS14O60783 128 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 MLLT10P55197 1068 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 OCLNQ16625 522 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SYT14P1Q58G82 188 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SLC25A30Q5SVS4 291 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 DCAF12Q5T6F0 453 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 GPR107Q5VW38 600 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 THSD4Q6ZMP0 1018 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 RAB11FIP2Q7L804 512 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 CACTIN-AS1Q8N1I8 211 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 BRIX1Q8TDN6 353 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 ISOC1Q96CN7 298 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SH3YL1Q96HL8 342 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 OR52D1Q9H346 318 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 KRCC1Q9NPI7 259 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 SIGLEC7Q9Y286 467 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 GPR52Q9Y2T5 361 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 PTRH2Q9Y3E5 179 aaKnown RBP12.61□□□□□ -0.39
PTPRF-202ENST00000372405 NPFFR2Q9Y5X5 522 aa12.61□□□□□ -0.39
PTPRF-202ENST00000372405 EP300Q09472 2414 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 IGKV1D-42A0A075B6H8 117 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 GTPBP1O00178 669 aaKnown RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 STK17BO94768 372 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 WISP1O95388 367 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CH25HO95992 272 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 DCKP27707 260 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PCSK6P29122 969 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 GSTT1P30711 240 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 EVI2BP34910 448 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CCR4P51679 360 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 NUBP1P53384 320 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ST3GAL4Q11206 333 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 SNAPC1Q16533 368 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PGGHGQ32M88 737 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CCDC81Q6ZN84 652 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TMCO5AQ8N6Q1 288 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 OR8K3Q8NH51 312 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 DNAJA4Q8WW22 397 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 LRR1Q96L50 414 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 LAT2Q9GZY6 243 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 UBQLN3Q9H347 655 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 HHATLQ9HCP6 504 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 RPS6KB2Q9UBS0 482 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 C19orf25Q9UFG5 118 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ICAM5Q9UMF0 924 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TMEM5Q9Y2B1 443 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TRAV27A0A087WT01 109 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ENO4A6NNW6 628 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF99A8MXY4 864 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PRR33A8MZF0 331 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 B4DXG7 233 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 C9J4A7 227 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 SURF4O15260 269 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PTP4A3O75365 173 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PPM1BO75688 479 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 LCKP06239 509 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TTKP33981 857 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 FBXW4P57775 412 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 COPZ1P61923 177 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF91Q05481 1191 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CRYZQ08257 329 aaKnown RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 WBP2NLQ6ICG8 309 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TIPARPQ7Z3E1 657 aaKnown RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ATG4DQ86TL0 474 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 OR5M3Q8NGP4 307 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 OR2Y1Q8NGV0 311 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TMEM163Q8TC26 289 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 FANK1Q8TC84 345 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 MYDGFQ969H8 173 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF582Q96NG8 517 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 DOK1Q99704 481 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 STRADBQ9C0K7 418 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 TAS2R16Q9NYV7 291 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CNOT2Q9NZN8 540 aaKnown RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 AKAP7Q9P0M2 348 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-202ENST00000372405 PISDQ9UG56 409 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 HS3ST3B1Q9Y662 390 aa12.6□□□□□ -0.39
PTPRF-202ENST00000372405 CPAMD8Q8IZJ3 1885 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 IGHV1-45A0A0A0MS14 117 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 EFCAB9A8MZ26 197 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 LRRN3E7EW58 273 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 BHLHE40O14503 412 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 HCRTR2O43614 444 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 NDUFB5O43674 189 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 SCO2O43819 266 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 GMFGO60234 142 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 CSO75390 466 aaKnown RBP12.59□□□□□ -0.39
PTPRF-202ENST00000372405 SLC2A10O95528 541 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 CELA2AP08217 269 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 SAGP10523 405 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-202ENST00000372405 COX6A1P12074 109 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 TGM1P22735 817 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 NRG3P56975 720 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 RAB15P59190 212 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 E2F1Q01094 437 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 TCF15Q12870 199 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 TUBA3CQ13748 450 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 IRF3Q14653 427 aa12.59□□□□□ -0.39
PTPRF-202ENST00000372405 TOMM34Q15785 309 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-202ENST00000372405 SYT6Q5T7P8 510 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms