RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ADORA3P0DMS8 318 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 EEF1B2P24534 225 aaKnown RBP8.41□□□□□ -1.06
UPF2-202ENST00000357604 CSNK1A1P48729 337 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 COMMD2Q86X83 199 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 FAM86B1Q8N7N1 296 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 PHF12Q96QT6 1004 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 TREX2Q9BQ50 279 aaPredicted RBP8.41□□□□□ -1.06
UPF2-202ENST00000357604 ZNF225Q9UK10 706 aa8.41□□□□□ -1.06
UPF2-202ENST00000357604 EXO1Q9UQ84 846 aaKnown RBP8.41□□□□□ -1.06
UPF2-202ENST00000357604 CEP290O15078 2479 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 ZNF587BE7ETH6 402 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 APOC1P02654 83 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 NID1P14543 1247 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 PTGER1P34995 402 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 CORO7P57737 925 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 COL9A2Q14055 689 aaPredicted RBP8.4□□□□□ -1.06
UPF2-202ENST00000357604 TRIP10Q15642 601 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 ZNF385CQ66K41 422 aaPredicted RBP8.4□□□□□ -1.06
UPF2-202ENST00000357604 B3GNT6Q6ZMB0 384 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 OR10G2Q8NGC3 310 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 UCK2Q9BZX2 261 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 GORASP2Q9H8Y8 452 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 NKIRAS2Q9NYR9 191 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 LYVE1Q9Y5Y7 322 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 ATG2BQ96BY7 2078 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 SAC3D1A6NKF1 404 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 CCL21O00585 134 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 AQP7O14520 342 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 TPST2O60704 377 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 COX6B1P14854 86 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 CD47Q08722 323 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 CEBPEQ15744 281 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 DPPA2Q7Z7J5 298 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 LILRA2Q8N149 483 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 FOXD3Q9UJU5 478 aaPredicted RBP8.4□□□□□ -1.06
UPF2-202ENST00000357604 POU2F3Q9UKI9 436 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 A0A1W2PPL8 197 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 GSC2O15499 205 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 UQCRC1P31930 480 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 CLDN15P56746 228 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 MYBPHQ13203 477 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 RPUSD3Q6P087 351 aaKnown RBP8.4□□□□□ -1.06
UPF2-202ENST00000357604 FCRLAQ7L513 359 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 GALNT10Q86SR1 603 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 PSMA8Q8TAA3 256 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 TMEM185BQ9H7F4 350 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 INIPQ9NRY2 104 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 TECTAO75443 2155 aa8.4□□□□□ -1.06
UPF2-202ENST00000357604 IQCMA0A1B0GVH7 501 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 KLF7O75840 302 aaPredicted RBP8.4□□□□□ -1.07
UPF2-202ENST00000357604 IGHG1P01857 330 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 GPX2P18283 190 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 MZT1Q08AG7 82 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 ENTPD8Q5MY95 495 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 OR5M10Q6IEU7 315 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 TMPPEQ6ZT21 453 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 AAED1Q7RTV5 226 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 FITM2Q8N6M3 262 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 ZNF615Q8N8J6 731 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 PROKR2Q8NFJ6 384 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 SNX33Q8WV41 574 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 TMEM239Q8WW34 195 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 SLC19A3Q9BZV2 496 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 PRORYQ9H606 182 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 CDH20Q9HBT6 801 aa8.4□□□□□ -1.07
UPF2-202ENST00000357604 CLOCKO15516 846 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 DNAJB5O75953 348 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 TMIGD3P0DMS9 266 aaPredicted RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 FPR1P21462 350 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CRABP1P29762 137 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 APLNRP35414 380 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CDKN2CP42773 168 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 C1orf140Q5VVS0 124 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 SLC15A3Q8IY34 581 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 ALDH16A1Q8IZ83 802 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CENPNQ96H22 339 aaPredicted RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 MED17Q9NVC6 651 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 ZNF226Q9NYT6 803 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 GTF2A1LQ9UNN4 478 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 MASP2O00187 686 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 PHYHO14832 338 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 MYL12AP19105 171 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CASP3P42574 277 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 RNF144AP50876 292 aaPredicted RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 RAC1P63000 192 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 TMEM181Q9P2C4 612 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 ERRFI1Q9UJM3 462 aaPredicted RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 MRPS18CQ9Y3D5 142 aaKnown RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 ENPP4Q9Y6X5 453 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 ZNF106Q9H2Y7 1883 aaKnown RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 CHP2O43745 196 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CT62P0C5K7 136 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 EMDP50402 254 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 RASGEF1BQ0VAM2 473 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 SLC25A35Q3KQZ1 300 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 TTC23Q5W5X9 447 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 GPR139Q6DWJ6 353 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 TYW3Q6IPR3 259 aaKnown RBP8.39□□□□□ -1.07
UPF2-202ENST00000357604 BEND4Q6ZU67 534 aa8.39□□□□□ -1.07
UPF2-202ENST00000357604 CCDC80Q76M96 950 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms