RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 C12orf45Q8N5I9 185 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 OR5D14Q8NGL3 314 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 HRASLSQ9HDD0 168 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 ACOT13Q9NPJ3 140 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 LOC105369274A0A096LPK9 316 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PRSS44E7EML9 344 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 IMPA2O14732 288 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 SLC6A8P48029 635 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 HOXA1P49639 335 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 VASPP50552 380 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 RPL23AP62750 156 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 OR4N4Q8N0Y3 316 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 NT5C3BQ969T7 300 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 OR51E2Q9H255 320 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 CACNG2Q9Y698 323 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 OR6C65A6NJZ3 312 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 EIF3FO00303 357 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 HTR5AP47898 357 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 CCL11P51671 97 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 SELENOWP63302 87 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 MUCL1Q96DR8 90 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 NID2Q14112 1375 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PRAMEF27A3QJZ7 478 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PTGESO14684 152 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PRDX3P30048 256 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 WNT4P56705 351 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 ENTPD8Q5MY95 495 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PRAMEF9Q5VWM5 478 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 SULF2Q8IWU5 870 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 BEST4Q8NFU0 473 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 CD200R1Q8TD46 325 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 HCSTQ9UBK5 93 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 CBLCQ9ULV8 474 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 TMEM184BQ9Y519 407 aaPredicted RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 STYXL1Q9Y6J8 313 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PEAK1Q9H792 1746 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 MRPL33O75394 65 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 ITGB2P05107 769 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 MGST1P10620 155 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 OMGP23515 440 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 TAGLNQ01995 201 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 RBPJQ06330 500 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 PDZD3Q86UT5 571 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 SNAPC3Q92966 411 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 BPIFA2Q96DR5 249 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 TCEAL7Q9BRU2 100 aa11.83□□□□□ -0.52
SDC3-201ENST00000336798 SIDT1Q9NXL6 827 aaKnown RBP11.83□□□□□ -0.52
SDC3-201ENST00000336798 AKAIN1P0CW23 69 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 F3P13726 295 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 ACPPP15309 386 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 RAB33AQ14088 237 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SLC10A1Q14973 349 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 OR8B8Q15620 311 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 CDONQ4KMG0 1287 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 ACSM3Q53FZ2 586 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 TMEM71Q6P5X7 295 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 PIWIL3Q7Z3Z3 882 aaKnown RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 COQ10AQ96MF6 247 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SAMD10Q9BYL1 202 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 ULBP2Q9BZM5 246 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 FOLH1BQ9HBA9 442 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 EHFQ9NZC4 300 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 CPNE7Q9UBL6 633 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 CLDN17P56750 224 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 HTRA4P83105 476 aaPredicted RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 PARS2Q7L3T8 475 aaKnown RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 NDUFAF7Q7L592 441 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 PSMF1Q92530 271 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 MED20Q9H944 212 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SLC6A5Q9Y345 797 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 K7EPK0 472 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 AIPO00170 330 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SNRNP70P08621 437 aaKnown RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 SLC2A1P11166 492 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SSTR2P30874 369 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 HOXA11P31270 313 aaPredicted RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 IL13RA1P78552 427 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 CAMK2DQ13557 499 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SLC22A10Q63ZE4 541 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 PNCKQ6P2M8 343 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 NIPAL3Q6P499 406 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SPARTQ8N0X7 666 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 FAM71E2Q8N5Q1 922 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 FAM160A2Q8N612 972 aaPredicted RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 ARL11Q969Q4 196 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 TWSG1Q9GZX9 223 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 HRH4Q9H3N8 390 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 C12orf49Q9H741 205 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 ZDHHC7Q9NXF8 308 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 TRAPPC2LQ9UL33 140 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 ZNF443Q9Y2A4 671 aaPredicted RBP11.82□□□□□ -0.52
SDC3-201ENST00000336798 TEX51A0A1B0GUA7 166 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 LOC102725191A0A1B0GVB3 256 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SLC10A3P09131 477 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 CTSCP53634 463 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 HES1Q14469 280 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 PXDC1Q5TGL8 231 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 SBSNQ6UWP8 590 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 PPP1R3BQ86XI6 285 aa11.82□□□□□ -0.52
SDC3-201ENST00000336798 B3GNT7Q8NFL0 401 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms