RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CCDC159P0C7I6 412 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 PNMTP11086 282 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CRHBPP24387 322 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 SLC1A3P43003 542 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 GPR4P46093 362 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 GIPRP48546 466 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 P2RX1P51575 399 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CCR4P51679 360 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 GAS1P54826 345 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 C17orf67Q0P5P2 114 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CHAF1BQ13112 559 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 BROXQ5VW32 411 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 OPN5Q6U736 354 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 TMPRSS7Q7RTY8 843 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 RPS19BP1Q86WX3 136 aaKnown RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 DTX1Q86Y01 620 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 KIF18BQ86Y91 864 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 RAB43Q86YS6 212 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 ENTHD1Q8IYW4 607 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 DND1Q8IYX4 353 aaKnown RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 CDK20Q8IZL9 346 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 OR5M3Q8NGP4 307 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 FAM81AQ8TBF8 368 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 SH3YL1Q96HL8 342 aaPredicted RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 SLC19A3Q9BZV2 496 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 ADAM19Q9H013 955 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 MEPEQ9NQ76 525 aaPredicted RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 TUBA8Q9NY65 449 aaPredicted RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 IL20Q9NYY1 176 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 RNF6Q9Y252 685 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 TRIM64CA6NLI5 447 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 SLC30A4O14863 429 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 MPZL2O60487 215 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 SERPINA7P05543 415 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 IFI30P13284 250 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 PGCP20142 388 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 MST1P26927 711 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 HLCSP50747 726 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 MLF1P58340 268 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 TUBA4AP68366 448 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CDK5Q00535 292 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 IL10RAQ13651 578 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CBFBQ13951 182 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 TMEM236Q5W0B7 351 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 C12orf73Q69YU5 71 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 H3F3CQ6NXT2 135 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 ATG4DQ86TL0 474 aaPredicted RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 MEX3DQ86XN8 651 aaKnown RBP12.88□□□□□ -0.35
SS18-201ENST00000269137 MARCH9Q86YJ5 346 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 PFN4Q8NHR9 129 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 B4GALNT2Q8NHY0 566 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 CNIH3Q8TBE1 160 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 DUSP19Q8WTR2 217 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 OSTF1Q92882 214 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 UBE2FQ969M7 185 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 BPIFA2Q96DR5 249 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 YIPF3Q9GZM5 350 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 SLC25A19Q9HC21 320 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 HHATLQ9HCP6 504 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 C20orf141Q9NUB4 165 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 IMPAD1Q9NX62 359 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 BLOC1S6Q9UL45 172 aa12.88□□□□□ -0.35
SS18-201ENST00000269137 A0A087WXM4 84 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 CDC42EP2O14613 210 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 TP53I11O14683 189 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 WBP4O75554 376 aaKnown RBP12.87□□□□□ -0.35
SS18-201ENST00000269137 CLPTM1O96005 669 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 IGF2P01344 180 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 GABRB1P18505 474 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 MAKP20794 623 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 SOX3P41225 446 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 SUMO3P55854 103 aaPredicted RBP12.87□□□□□ -0.35
SS18-201ENST00000269137 CSNK2BP67870 215 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 Q0VFX4 171 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 TMEM81Q6P7N7 255 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 ZNF620Q6ZNG0 422 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 OR10G3Q8NGC4 313 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 ZNF563Q8TA94 476 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 GPR119Q8TDV5 335 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 ADAMTS17Q8TE56 1095 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 APH1BQ8WW43 257 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 TRUB1Q8WWH5 349 aaKnown RBP12.87□□□□□ -0.35
SS18-201ENST00000269137 IP6K3Q96PC2 410 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 SECISBP2Q96T21 854 aaKnown RBP12.87□□□□□ -0.35
SS18-201ENST00000269137 ADNPQ9H2P0 1102 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 DSN1Q9H410 356 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 ASCL3Q9NQ33 180 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 ZNF226Q9NYT6 803 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 CDH10Q9Y6N8 788 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 PCNX3Q9H6A9 2034 aa12.87□□□□□ -0.35
SS18-201ENST00000269137 IGLV3-32A0A0A0MS00 114 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 UNC119BA6NIH7 251 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 ELOA3DA6NLF2 546 aaPredicted RBP12.86□□□□□ -0.35
SS18-201ENST00000269137 SLC1A7O00341 560 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 ITPKBP27987 946 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 SSR4P51571 173 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 GABARAPL2P60520 117 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 GINS1Q14691 196 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 ELOA3BQ3SY89 546 aa12.86□□□□□ -0.35
SS18-201ENST00000269137 ELOA3Q8NG57 546 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms